flowWorkspace: Infrastructure for representing and interacting with the gated cytometry
Version 3.22.0

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

AuthorGreg Finak, Mike Jiang
Bioconductor views DataImport DataRepresentation FlowCytometry Preprocessing
Date of publicationNone
MaintainerGreg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version3.22.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowWorkspace")

Getting started

Package overview
README.md
flowWorkspace Introduction: A Package to store and maninpulate gated flow data

Popular man pages

add: Create a GatingSet and add/remove the flowCore gate(or...
flowJo_biexp_trans: flowJo biexponential transformation.
flowWorkspace-package: Import and replicate flowJo workspaces and gating schemes...
getData-methods: get gated flow data from a...
getGate: Return the flowCore gate definition associated with a node in...
getMergedStats: Get Cell Population Statistics and Sample Metadata
parseWorkspace: Parse a flowJo Workspace
See all...

All man pages Function index File listing

Man pages

add: Create a GatingSet and add/remove the flowCore gate(or...
asinh_Gml2: inverse hyperbolic sine transform function generator...
asinhtGml2_trans: Inverse hyperbolic sine transformation.
booleanFilter-class: A class describing logical operation (& or |) of the...
checkRedundantNodes: try to determine the redundant terminal(or leaf) nodes that...
clone: clone a GatingSet
compensate: compensate the flow data asssociated with the GatingSet
dropRedundantChannels: Remove the channels from flow data that are not used by gates
dropRedundantNodes: Remove the terminal leaf nodes that make the gating trees to...
estimateLogicle.GatingHierarchy: Compute logicle transformation from the flowData associated...
filterObject: convert flowCore filter to a list It convert the flowCore...
flow_breaks: Generate the breaks that makes sense for flow data...
flowData: Fetch or replace the flowData object associated with a...
flowJo_biexp_trans: flowJo biexponential transformation.
flowJo.fasinh: inverse hyperbolic sine transform function
flowJo_fasinh_trans: flowJo inverse hyperbolic sine transformation.
flowJoTrans: construct the flowJo-type biexponentioal transformation...
flowJoWorkspace-class: An R representation of a flowJo workspace.
flow_trans: helper function to generate a trans objects Used by other...
flowWorkspace-package: Import and replicate flowJo workspaces and gating schemes...
flowWorkspace.par.get: flowWorkspace.par.set sets a set of parameters in the...
flowWorkspace.par.init: workspace version is parsed from xml node...
GatingHierarchy-class: Class GatingHierarchy
GatingSet-class: Class '"GatingSet"'
GatingSetList-class: Class '"GatingSetList"'
GatingSet-methods: constructors for GatingSet
getCompensationMatrices: Retrieve the compensation matrices from a GatingHierarchy
getData-methods: get gated flow data from a...
getFJWSubsetIndices: Fetch the indices for a subset of samples in a flowJo...
getGate: Return the flowCore gate definition associated with a node in...
getIndiceMat: Return the single-cell matrix of 1/0 dichotomized expression
getIndices: Get the membership indices for each event with respect to a...
getIndices-GatingSet-name-method: routine to return the indices by specify boolean combination...
getKeywords: Get Keywords
getMergedStats: Get Cell Population Statistics and Sample Metadata
getNodes: Get the names of all nodes from a gating hierarchy.
getParent: Return the name of the parent population or a list of child...
getPopStats: Return a table of population statistics for all populations...
getSampleGroups: Get a table of sample groups from a flowJo workspace
getSamples: Get a list of samples from a flowJo workspace
getSingleCellExpression: Return the cell events data that express in any of the single...
getTransformations: Return a list of transformations or a transformation in a...
groupByChannels: split GatingSets into groups based on their flow channels
groupByTree: split GatingSets into groups based on their gating schemes Be...
insertGate: insert a dummy gate to the GatingSet
isNcdf: determine the flow data associated with a Gating Hiearchy is...
keyword: Retrieve a specific keyword for a specific sample in a...
lapply-methods: apply 'FUN' to each sample (i.e. 'GatingHierarchy')
length: Methods to get the length of a GatingSet
logicleGml2_trans: GatingML2 version of logicle transformation.
logicle_trans: logicle transformation.
loglevel: get/set the log level
markernames: Get/set the column(channel) or marker names
mkformula: make a formula from a character vector
ncFlowSet-methods: Fetch the flowData object associated with a GatingSet .
openWorkspace: Open/Close a flowJo workspace
parseWorkspace: Parse a flowJo Workspace
pData-methods: read/set pData of flow data associated with 'GatingSet' or...
plotGate-methods: Plot gates and associated cell population contained in a...
plot-methods: plot a gating tree
plotPopCV: Plot the coefficient of variation between xml and openCyto...
prettyAxis: Determine tick mark locations and labels for a given channel...
recompute: Compute the cell events by the gates stored within the gating...
sampleNames: Get/update sample names in a GatingSet
save_gs: save/load a GatingSet/GatingSetList to/from disk.
setGate: update the gate
setNode-methods: Update the name of one node in a gating hierarchy/GatingSet.
standardize-GatingSet: The tools to standardize the tree structures and channel...
subset: subset the GatingSet/GatingSetList based on 'pData'
transform: tranform the flow data asssociated with the GatingSet
transformerList: Constructor for transformerList object
updateChannels: Update the channel information of a GatingSet (c++ part)

Functions

GatingHierarchy-class Man page
GatingSet Man page
GatingSet,GatingHierarchy,character-method Man page
GatingSet,character,character-method Man page
GatingSet,flowSet,ANY-method Man page
GatingSet-class Man page
GatingSetList Man page Source code
GatingSetList-class Man page
LdFlags Source code
Rm Man page
Rm,character,GatingHierarchy,character-method Man page
Rm,character,GatingSet,character-method Man page
Rm,character,GatingSetList,character-method Man page
[,GatingSet,ANY-method Man page
[,GatingSetList,ANY-method Man page
[[,GatingSet,character-method Man page
[[,GatingSet,logical-method Man page
[[,GatingSet,numeric-method Man page
add Man page
add,GatingHierarchy,filter-method Man page
add,GatingHierarchy,filters-method Man page
add,GatingHierarchy,quadGate-method Man page
add,GatingSet,filter-method Man page
add,GatingSet,filterList-method Man page
add,GatingSet,filters-method Man page
add,GatingSet,filtersList-method Man page
add,GatingSet,list-method Man page
add,GatingSetList,filter-method Man page
add,GatingSetList,filterList-method Man page
add,GatingSetList,filters-method Man page
add,GatingSetList,filtersList-method Man page
add,GatingSetList,list-method Man page
addGate Source code
addGatingHierarchies Source code
addTrans Source code
asinh_Gml2 Man page Source code
asinhtGml2_trans Man page Source code
booleanFilter Man page Source code
booleanFilter-class Man page
char2booleanFilter Man page Source code
checkRedundantNodes Man page Source code
clone Man page
clone,GatingSet-method Man page
clone-methods Man page
closeWorkspace Man page
closeWorkspace,flowJoWorkspace-method Man page
colnames,GatingHierarchy-method Man page
colnames,GatingSet-method Man page
colnames<-,GatingHierarchy-method Man page
colnames<-,GatingSet-method Man page
compact Source code
compareFlowData Source code
compareGatingHierarchy Source code
compareGatingSet Source code
compensate,GatingSet,ANY-method Man page
compensate,GatingSetList,ANY-method Man page
compute.timestep Source code
computeCV Source code
computeCV_gh Source code
convertTrans Source code
cpp_CloneGatingSet Source code
cpp_NewGatingSet Source code
cpp_NewGatingSet_rootOnly Source code
cpp_addGate Source code
cpp_boolGating Source code
cpp_combineGatingSet Source code
cpp_computeGates Source code
cpp_gating Source code
cpp_getChildren Source code
cpp_getCompensation Source code
cpp_getGate Source code
cpp_getGateFlag Source code
cpp_getHiddenFlag Source code
cpp_getIndices Source code
cpp_getLogLevel Source code
cpp_getNegateFlag Source code
cpp_getNodeID Source code
cpp_getNodes Source code
cpp_getParent Source code
cpp_getPopStats Source code
cpp_getSamples Source code
cpp_getSingleCellExpression Source code
cpp_getSingleCellExpressionByGate Source code
cpp_getTransformations Source code
cpp_loadGatingSet Source code
cpp_parseWorkspace Source code
cpp_plotGh Source code
cpp_removeNode Source code
cpp_saveGatingSet Source code
cpp_setGate Source code
cpp_setIndices Source code
cpp_setLogLevel Source code
cpp_setNodeFlag Source code
cpp_setNodeName Source code
cpp_setSample Source code
cpp_togleErrorFlag Source code
dropRedundantChannels Man page Source code
dropRedundantNodes Man page Source code
estimateLogicle.GatingHierarchy Man page Source code
filterObject Man page
filterObject,booleanFilter-method Man page
filterObject,ellipsoidGate-method Man page
filterObject,polygonGate-method Man page
filterObject,rectangleGate-method Man page
fix_channel_slash Source code
fix_y_axis Source code
flowData Man page
flowData,GatingSet-method Man page
flowData<- Man page
flowData<-,GatingSet-method Man page
flowJo.fasinh Man page Source code
flowJo.fsinh Man page Source code
flowJoTrans Man page Source code Source code
flowJoWorkspace-class Man page
flowJo_biexp_trans Man page Source code
flowJo_fasinh_trans Man page Source code
flowWorkspace Man page
flowWorkspace-package Man page
flowWorkspace.par.get Man page Source code
flowWorkspace.par.init Man page Source code
flowWorkspace.par.set Man page Source code
flow_breaks Man page Source code
flow_trans Man page Source code
formatAxis Source code
formulaParser Source code
fromGXL Source code
getAllDescendants Source code
getAxisLabels Source code
getChildren Man page
getChildren,GatingSet,character-method Man page
getCompensationMatrices Man page
getCompensationMatrices,GatingHierarchy-method Man page
getData Man page
getData,GatingHierarchy,character-method Man page
getData,GatingHierarchy,missing-method Man page
getData,GatingSet,character-method Man page
getData,GatingSet,missing-method Man page
getData,GatingSetList,ANY-method Man page
getFJWSubsetIndices Man page Source code
getFileNames Source code Source code
getGate Man page
getGate,GatingHierarchy,character-method Man page
getGate,GatingSet,character-method Man page
getGate,GatingSetList,character-method Man page
getGraph Source code
getIndiceMat Man page Source code Source code
getIndices Man page
getIndices,GatingHierarchy,character-method Man page
getIndices,GatingSet,name-method Man page
getKeyword Source code
getKeywords Man page
getKeywords,flowJoWorkspace,character-method Man page
getKeywords,flowJoWorkspace,numeric-method Man page
getKeywordsBySampleID Source code
getKeywordsBySampleName Source code
getLoglevel Man page Source code
getMergedStats Man page Source code
getNodeInd Source code
getNodes Man page
getNodes,GatingSet-method Man page
getNodes_removeHidden Source code
getOverlay Source code
getParent Man page
getParent,GatingSet,character-method Man page
getPopChnlMapping Source code
getPopCounts Source code
getPopStat Source code
getPopStats Man page
getPopStats,GatingHierarchy-method Man page
getPopStats,GatingSet-method Man page
getPopStats,GatingSetList-method Man page
getProp Man page
getProp,GatingHierarchy,character-method Man page
getRange Source code
getSampleGroups Man page Source code
getSampleGroups,flowJoWorkspace-method Man page
getSamples Man page Source code
getSamples,flowJoWorkspace-method Man page
getSingleCellExpression Man page Source code
getSingleCellExpression,GatingSet,character-method Man page
getSingleCellExpression,GatingSetList,character-method Man page
getSingleCellExpressionByGate Man page Source code
getSplineCoefs Source code
getTotal Man page
getTotal,GatingHierarchy,character-method Man page
getTransformations Man page Source code
getTransformations,GatingHierarchy-method Man page
getWorkspaceType Source code
graph_handler Source code
groupByChannels Man page Source code
groupByTree Man page Source code
insertGate Man page Source code
isNcdf Man page Source code
keyword Man page
keyword,GatingHierarchy,character-method Man page
keyword,GatingHierarchy,missing-method Man page
keyword,GatingSet,character-method Man page
keyword,GatingSet,missing-method Man page
keyword,GatingSetList,character-method Man page
keyword,GatingSetList,missing-method Man page
lapply,GatingSet-method Man page
layoutGraph Source code
length Man page
length,GatingSet-method Man page
load_gs Man page Source code Source code
load_gslist Man page Source code
logicleGml2_trans Man page Source code
logicle_trans Man page Source code
markernames,GatingHierarchy-method Man page
markernames,GatingSet-method Man page
markernames<-,GatingHierarchy-method Man page
markernames<-,GatingSet-method Man page
matchCols Source code
merge-GatingSet Man page
mergeGates Source code
mkformula Man page Source code
ncFlowSet Man page
ncFlowSet,GatingSet-method Man page
ncFlowSet<- Man page
ncFlowSet<-,GatingSet-method Man page
openWorkspace Man page
openWorkspace,character-method Man page
pData Man page
pData,GatingHierarchy-method Man page
pData,GatingSet-method Man page
pData<- Man page
pData<-,GatingSet,data.frame-method Man page
pData<-,GatingSetList,data.frame-method Man page
parse.pData Source code
parseCond Source code
parseWorkspace Man page Source code
parseWorkspace,flowJoWorkspace-method Man page
plot Man page
plot,GatingSet,character-method Man page
plot,GatingSet,missing-method Man page
plotGate Man page Source code
plotGate,GatingHierarchy,character-method Man page
plotGate,GatingHierarchy,missing-method Man page
plotGate,GatingHierarchy,numeric-method Man page
plotGate,GatingSet,character-method Man page
plotGate,GatingSet,missing-method Man page
plotGate,GatingSet,numeric-method Man page
plotGate,GatingSetList,character-method Man page
plotGate-methods Man page
plotGate.gh Source code
plotGatingTree Source code
plotPopCV Man page
plotPopCV,GatingHierarchy-method Man page
plotPopCV,GatingSet-method Man page
postProcessSVG Source code
preplot Source code
preprocessMap Source code
preprocessor Source code
pretty10exp Source code
prettyAxis Man page Source code
rbind2,GatingSetList,missing-method Man page
recompute Man page Source code
recompute,GatingSet-method Man page
recompute,GatingSetList-method Man page
renameMarker Source code
renderNodes.svgAnno Source code
sBoolGate Source code
sCompensated Source code
sampleNames Man page
sampleNames,GatingHierarchy-method Man page
sampleNames,GatingSet-method Man page
sampleNames<- Man page
sampleNames<-,GatingSet,ANY-method Man page
sampleNames<-,GatingSet-method Man page
save_gs Man page Source code Source code
save_gslist Man page Source code
setGate Man page
setGate,GatingHierarchy,character,filter-method Man page
setGate,GatingSet,character,filterList-method Man page
setGate,GatingSet,character,list-method Man page
setLoglevel Man page Source code
setNode Man page
setNode,GatingHierarchy,character,character-method Man page
setNode,GatingHierarchy,character,logical-method Man page
setNode,GatingSet,character,ANY-method Man page
show,GatingHierarchy-method Man page
show,GatingSet-method Man page
show,booleanFilter-method Man page
show,flowJoWorkspace-method Man page
standardize-GatingSet Man page
subset.GatingSet Man page Source code
transform,GatingSet-method Man page
transform,GatingSetList-method Man page
transformRange Source code
transformerList Man page Source code
trimWhiteSpace Source code
updateChannels Man page Source code Source code
uuid_gen Source code
validGatingSetListObject Source code

Files

DESCRIPTION
INSTALL
NAMESPACE
R
R/AllClasses.R
R/AllGenerics.R
R/GatingHierarchy_Methods.R
R/GatingSetList_Methods.R
R/GatingSet_Methods.R
R/RcppExports.R
R/add_Methods.R
R/filterObject_Methods.R
R/flowJoWorkspace_Methods.R
R/flow_trans.R
R/getSingleCellExpression.R
R/merge_GatingSet.R
R/setGate_Methods.R
R/utils.R
R/zzz.R
README.md
build
build/vignette.rds
cleanup
configure
configure.ac
example
inst
inst/NEWS
inst/cppTest
inst/cppTest/unitTest
inst/cppTest/unitTest/computeCalibrationTable.cpp
inst/cppTest/unitTest/cpConstructorTest.cpp
inst/cppTest/unitTest/gatingSet_test.cpp
inst/cppTest/unitTest/ncdfFlow.cpp
inst/cppTest/unitTest/ncdfFlow.hpp
inst/cppTest/unitTest/ncdf_test.cpp
inst/cppTest/unitTest/spline_test.cpp
inst/cppTest/unitTest/src.cpp
inst/cppTest/unitTest/testSuite.cpp
inst/cppTest/unitTest/test_header.hpp
inst/doc
inst/doc/HowToMergeGatingSet.R
inst/doc/HowToMergeGatingSet.Rmd
inst/doc/HowToMergeGatingSet.html
inst/doc/plotGate.R
inst/doc/plotGate.Rmd
inst/doc/plotGate.html
inst/extdata
inst/extdata/empty_workspace_9.2.xml
inst/include
inst/include/flowWorkspace
inst/include/flowWorkspace.h
inst/javascript
inst/javascript/showPlot.js
inst/tests
inst/tests/expect_result
man
man/GatingHierarchy-class.Rd
man/GatingSet-class.Rd
man/GatingSet-methods.Rd
man/GatingSetList-class.Rd
man/add.Rd
man/asinh_Gml2.Rd
man/asinhtGml2_trans.Rd
man/booleanFilter-class.Rd
man/checkRedundantNodes.Rd
man/clone.Rd
man/compensate.Rd
man/dropRedundantChannels.Rd
man/dropRedundantNodes.Rd
man/estimateLogicle.GatingHierarchy.Rd
man/filterObject.Rd
man/flowData.Rd
man/flowJo.fasinh.Rd
man/flowJoTrans.Rd
man/flowJoWorkspace-class.Rd
man/flowJo_biexp_trans.Rd
man/flowJo_fasinh_trans.Rd
man/flowWorkspace-package.Rd
man/flowWorkspace.par.get.Rd
man/flowWorkspace.par.init.Rd
man/flow_breaks.Rd
man/flow_trans.Rd
man/getCompensationMatrices.Rd
man/getData-methods.Rd
man/getFJWSubsetIndices.Rd
man/getGate.Rd
man/getIndiceMat.Rd
man/getIndices-GatingSet-name-method.Rd
man/getIndices.Rd
man/getKeywords.Rd
man/getMergedStats.Rd
man/getNodes.Rd
man/getParent.Rd
man/getPopStats.Rd
man/getSampleGroups.Rd
man/getSamples.Rd
man/getSingleCellExpression.Rd
man/getTransformations.Rd
man/groupByChannels.Rd
man/groupByTree.Rd
man/insertGate.Rd
man/isNcdf.Rd
man/keyword.Rd
man/lapply-methods.Rd
man/length.Rd
man/logicleGml2_trans.Rd
man/logicle_trans.Rd
man/loglevel.Rd
man/markernames.Rd
man/mkformula.Rd
man/ncFlowSet-methods.Rd
man/openWorkspace.Rd
man/pData-methods.Rd
man/parseWorkspace.Rd
man/plot-methods.Rd
man/plotGate-methods.Rd
man/plotPopCV.Rd
man/prettyAxis.Rd
man/recompute.Rd
man/sampleNames.Rd
man/save_gs.Rd
man/setGate.Rd
man/setNode-methods.Rd
man/standardize-GatingSet.Rd
man/subset.Rd
man/transform.Rd
man/transformerList.Rd
man/updateChannels.Rd
src
src/GatingHierarchy.cpp
src/GatingSet.cpp
src/GatingSet.pb.cc
src/GatingSet.pb.h
src/GatingSet.proto
src/GatingSet_pb2.py
src/Makevars.in
src/Makevars.win
src/POPINDICES.cpp
src/R_API.cpp
src/R_GatingHierarchy.cpp
src/R_GatingSet.cpp
src/RcppExports.cpp
src/boost_serialization
src/boost_serialization/boost
src/boost_serialization/boost/archive
src/boost_serialization/boost/serialization
src/calibrationTable.cpp
src/compensation.cpp
src/delimitedMessage.cpp
src/ellipse2points.cpp
src/flowData.cpp
src/flowJoWorkspace.cpp
src/flowWorkspace_cpp.doxyfile
src/gate.cpp
src/getSingleCellExpression.cpp
src/global.cpp
src/include
src/include/GatingHierarchy.hpp
src/include/GatingSet.hpp
src/include/POPINDICES.hpp
src/include/calibrationTable.hpp
src/include/compensation.hpp
src/include/delimitedMessage.hpp
src/include/ellipse2points.hpp
src/include/flowData.hpp
src/include/flowJoWorkspace.hpp
src/include/gate.hpp
src/include/global.hpp
src/include/macFlowJoWorkspace.hpp
src/include/nodeProperties.hpp
src/include/populationTree.hpp
src/include/spline.hpp
src/include/transformation.hpp
src/include/winFlowJoWorkspace.hpp
src/include/workspace.hpp
src/include/wsNode.hpp
src/macFlowJoWorkspace.cpp
src/nodeProperties.cpp
src/pb_build
src/pb_build/Makefile
src/pb_build/config.h
src/pb_build/config.log
src/pb_build/config.status
src/pb_build/libtool
src/pb_build/protobuf-lite.pc
src/pb_build/protobuf.pc
src/pb_build/src
src/pb_build/src/.libs
src/pb_build/src/.libs/libprotobuf.la
src/pb_build/src/.libs/libprotobuf.lai
src/pb_build/src/.libs/libprotobuf.so
src/pb_build/src/.libs/libprotobuf.so.9
src/pb_build/src/.libs/libprotobuf.so.9.0.0
src/pb_build/src/Makefile
src/pb_build/src/google
src/pb_build/src/google/protobuf
src/pb_build/src/google/protobuf/.dirstamp
src/pb_build/src/google/protobuf/.libs
src/pb_build/src/google/protobuf/.libs/descriptor.o
src/pb_build/src/google/protobuf/.libs/descriptor.pb.o
src/pb_build/src/google/protobuf/.libs/descriptor_database.o
src/pb_build/src/google/protobuf/.libs/dynamic_message.o
src/pb_build/src/google/protobuf/.libs/extension_set.o
src/pb_build/src/google/protobuf/.libs/extension_set_heavy.o
src/pb_build/src/google/protobuf/.libs/generated_message_reflection.o
src/pb_build/src/google/protobuf/.libs/generated_message_util.o
src/pb_build/src/google/protobuf/.libs/message.o
src/pb_build/src/google/protobuf/.libs/message_lite.o
src/pb_build/src/google/protobuf/.libs/reflection_ops.o
src/pb_build/src/google/protobuf/.libs/repeated_field.o
src/pb_build/src/google/protobuf/.libs/service.o
src/pb_build/src/google/protobuf/.libs/text_format.o
src/pb_build/src/google/protobuf/.libs/unknown_field_set.o
src/pb_build/src/google/protobuf/.libs/wire_format.o
src/pb_build/src/google/protobuf/.libs/wire_format_lite.o
src/pb_build/src/google/protobuf/descriptor.lo
src/pb_build/src/google/protobuf/descriptor.pb.lo
src/pb_build/src/google/protobuf/descriptor_database.lo
src/pb_build/src/google/protobuf/dynamic_message.lo
src/pb_build/src/google/protobuf/extension_set.lo
src/pb_build/src/google/protobuf/extension_set_heavy.lo
src/pb_build/src/google/protobuf/generated_message_reflection.lo
src/pb_build/src/google/protobuf/generated_message_util.lo
src/pb_build/src/google/protobuf/io
src/pb_build/src/google/protobuf/io/.dirstamp
src/pb_build/src/google/protobuf/io/.libs
src/pb_build/src/google/protobuf/io/.libs/coded_stream.o
src/pb_build/src/google/protobuf/io/.libs/gzip_stream.o
src/pb_build/src/google/protobuf/io/.libs/printer.o
src/pb_build/src/google/protobuf/io/.libs/strtod.o
src/pb_build/src/google/protobuf/io/.libs/tokenizer.o
src/pb_build/src/google/protobuf/io/.libs/zero_copy_stream.o
src/pb_build/src/google/protobuf/io/.libs/zero_copy_stream_impl.o
src/pb_build/src/google/protobuf/io/.libs/zero_copy_stream_impl_lite.o
src/pb_build/src/google/protobuf/io/coded_stream.lo
src/pb_build/src/google/protobuf/io/gzip_stream.lo
src/pb_build/src/google/protobuf/io/printer.lo
src/pb_build/src/google/protobuf/io/strtod.lo
src/pb_build/src/google/protobuf/io/tokenizer.lo
src/pb_build/src/google/protobuf/io/zero_copy_stream.lo
src/pb_build/src/google/protobuf/io/zero_copy_stream_impl.lo
src/pb_build/src/google/protobuf/io/zero_copy_stream_impl_lite.lo
src/pb_build/src/google/protobuf/message.lo
src/pb_build/src/google/protobuf/message_lite.lo
src/pb_build/src/google/protobuf/reflection_ops.lo
src/pb_build/src/google/protobuf/repeated_field.lo
src/pb_build/src/google/protobuf/service.lo
src/pb_build/src/google/protobuf/stubs
src/pb_build/src/google/protobuf/stubs/.dirstamp
src/pb_build/src/google/protobuf/stubs/.libs
src/pb_build/src/google/protobuf/stubs/.libs/atomicops_internals_x86_gcc.o
src/pb_build/src/google/protobuf/stubs/.libs/atomicops_internals_x86_msvc.o
src/pb_build/src/google/protobuf/stubs/.libs/common.o
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tests
tests/testthat
tests/testthat.R
tests/testthat/GatingHierarchy-testSuite.R
tests/testthat/GatingSet-testSuite.R
tests/testthat/GatingSetList-testSuite.R
tests/testthat/InternalTestSuite.R
tests/testthat/expect_result
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tests/testthat/expect_result/getGate_gs.rds
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tests/testthat/expect_result/getGraph_gh.rds
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tests/testthat/flowJoWorkspace-testSuite.R
tests/testthat/helper-expectResult.R
tests/testthat/test-archive.R
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tests/testthat/test-filterObject.R
tests/testthat/test-merge.R
tests/testthat/test-misc.R
tests/testthat/test-parseWorkspace.R
vignettes
vignettes/HowToMergeGatingSet.Rmd
vignettes/flowWorkspace-Introduction.Rmd
vignettes/plotGate.Rmd
flowWorkspace documentation built on May 20, 2017, 9:57 p.m.

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