flowWorkspace: Infrastructure for representing and interacting with the gated cytometry

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

AuthorGreg Finak, Mike Jiang
Date of publicationNone
MaintainerGreg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version3.20.5

View on Bioconductor

Man pages

add: Create a GatingSet and add/remove the flowCore gate(or...

asinh_Gml2: inverse hyperbolic sine transform function generator...

asinhtGml2_trans: Inverse hyperbolic sine transformation.

booleanFilter-class: A class describing logical operation (& or |) of the...

checkRedundantNodes: try to determine the redundant terminal(or leaf) nodes that...

clone: clone a GatingSet

compensate: compensate the flow data asssociated with the GatingSet

dropRedundantChannels: Remove the channels from flow data that are not used by gates

dropRedundantNodes: Remove the terminal leaf nodes that make the gating trees to...

estimateLogicle.GatingHierarchy: Compute logicle transformation from the flowData associated...

filterObject: convert flowCore filter to a list It convert the flowCore...

flow_breaks: Generate the breaks that makes sense for flow data...

flowData: Fetch or replace the flowData object associated with a...

flowJo_biexp_trans: flowJo biexponential transformation.

flowJo.fasinh: inverse hyperbolic sine transform function

flowJo_fasinh_trans: flowJo inverse hyperbolic sine transformation.

flowJoTrans: construct the flowJo-type biexponentioal transformation...

flowJoWorkspace-class: An R representation of a flowJo workspace.

flow_trans: helper function to generate a trans objects Used by other...

flowWorkspace-package: Import and replicate flowJo workspaces and gating schemes...

flowWorkspace.par.get: flowWorkspace.par.set sets a set of parameters in the...

flowWorkspace.par.init: workspace version is parsed from xml node...

GatingHierarchy-class: Class GatingHierarchy

GatingSet-class: Class '"GatingSet"'

GatingSetList-class: Class '"GatingSetList"'

GatingSet-methods: constructors for GatingSet

getCompensationMatrices: Retrieve the compensation matrices from a GatingHierarchy

getData-methods: get gated flow data from a...

getFJWSubsetIndices: Fetch the indices for a subset of samples in a flowJo...

getGate: Return the flowCore gate definition associated with a node in...

getIndiceMat: Return the single-cell matrix of 1/0 dichotomized expression

getIndices: Get the membership indices for each event with respect to a...

getIndices-GatingSet-name-method: routine to return the indices by specify boolean combination...

getKeywords: Get Keywords

getNodes: Get the names of all nodes from a gating hierarchy.

getParent: Return the name of the parent population or a list of child...

getPopStats: Return a table of population statistics for all populations...

getSampleGroups: Get a table of sample groups from a flowJo workspace

getSamples: Get a list of samples from a flowJo workspace

getSingleCellExpression: Return the cell events data that express in any of the single...

getTransformations: Return a list of transformations or a transformation in a...

groupByChannels: split GatingSets into groups based on their flow channels

groupByTree: split GatingSets into groups based on their gating schemes Be...

insertGate: insert a dummy gate to the GatingSet

isNcdf: determine the flow data associated with a Gating Hiearchy is...

keyword: Retrieve a specific keyword for a specific sample in a...

lapply-methods: apply 'FUN' to each sample (i.e. 'GatingHierarchy')

length: Methods to get the length of a GatingSet

logicleGml2_trans: GatingML2 version of logicle transformation.

logicle_trans: logicle transformation.

loglevel: get/set the log level

markernames: Get/set the column(channel) or marker names

mkformula: make a formula from a character vector

ncFlowSet-methods: Fetch the flowData object associated with a GatingSet .

openWorkspace: Open/Close a flowJo workspace

parseWorkspace: Parse a flowJo Workspace

pData-methods: read/set pData of flow data associated with 'GatingSet' or...

plotGate-methods: Plot gates and associated cell population contained in a...

plot-methods: plot a gating tree

plotPopCV: Plot the coefficient of variation between flowJo and flowCore...

prettyAxis: Determine tick mark locations and labels for a given channel...

recompute: Compute the cell events by the gates stored within the gating...

sampleNames: Get/update sample names in a GatingSet

save_gs: save/load a GatingSet/GatingSetList to/from disk.

setGate: update the gate

setNode-methods: Update the name of one node in a gating hierarchy/GatingSet.

standardize-GatingSet: The tools to standardize the tree structures and channel...

subset: subset the GatingSet/GatingSetList based on 'pData'

transform: tranform the flow data asssociated with the GatingSet

transformerList: Constructor for transformerList object

updateChannels: Update the channel information of a GatingSet (c++ part)

Functions

add Man page
add,GatingHierarchy,filter-method Man page
add,GatingHierarchy,filters-method Man page
add,GatingHierarchy,quadGate-method Man page
add,GatingSet,filterList-method Man page
add,GatingSet,filter-method Man page
add,GatingSet,filtersList-method Man page
add,GatingSet,filters-method Man page
add,GatingSetList,filterList-method Man page
add,GatingSetList,filter-method Man page
add,GatingSetList,filtersList-method Man page
add,GatingSetList,filters-method Man page
add,GatingSetList,list-method Man page
add,GatingSet,list-method Man page
asinh_Gml2 Man page
asinhtGml2_trans Man page
booleanFilter Man page
booleanFilter-class Man page
char2booleanFilter Man page
checkRedundantNodes Man page
clone Man page
clone,GatingSet-method Man page
clone-methods Man page
closeWorkspace Man page
closeWorkspace,flowJoWorkspace-method Man page
colnames<-,GatingHierarchy-method Man page
colnames,GatingHierarchy-method Man page
colnames<-,GatingSet-method Man page
colnames,GatingSet-method Man page
compensate,GatingSet,ANY-method Man page
compensate,GatingSetList,ANY-method Man page
dropRedundantChannels Man page
dropRedundantNodes Man page
estimateLogicle.GatingHierarchy Man page
filterObject Man page
filterObject,booleanFilter-method Man page
filterObject,ellipsoidGate-method Man page
filterObject,polygonGate-method Man page
filterObject,rectangleGate-method Man page
flow_breaks Man page
flowData Man page
flowData<- Man page
flowData<-,GatingSet-method Man page
flowData,GatingSet-method Man page
flowJo_biexp_trans Man page
flowJo.fasinh Man page
flowJo_fasinh_trans Man page
flowJo.fsinh Man page
flowJoTrans Man page
flowJoWorkspace-class Man page
flow_trans Man page
flowWorkspace Man page
flowWorkspace-package Man page
flowWorkspace.par.get Man page
flowWorkspace.par.init Man page
flowWorkspace.par.set Man page
GatingHierarchy-class Man page
GatingSet Man page
[,GatingSet,ANY-method Man page
GatingSet,character,character-method Man page
[[,GatingSet,character-method Man page
GatingSet-class Man page
GatingSet,flowSet,ANY-method Man page
GatingSet,GatingHierarchy,character-method Man page
GatingSetList Man page
[,GatingSetList,ANY-method Man page
GatingSetList-class Man page
[[,GatingSet,logical-method Man page
[[,GatingSet,numeric-method Man page
getChildren Man page
getChildren,GatingSet,character-method Man page
getCompensationMatrices Man page
getCompensationMatrices,GatingHierarchy-method Man page
getData Man page
getData,GatingHierarchy,character-method Man page
getData,GatingHierarchy,missing-method Man page
getData,GatingSet,character-method Man page
getData,GatingSetList,ANY-method Man page
getData,GatingSet,missing-method Man page
getFJWSubsetIndices Man page
getGate Man page
getGate,GatingHierarchy,character-method Man page
getGate,GatingSet,character-method Man page
getGate,GatingSetList,character-method Man page
getIndiceMat Man page
getIndices Man page
getIndices,GatingHierarchy,character-method Man page
getIndices,GatingSet,name-method Man page
getKeywords Man page
getKeywords,flowJoWorkspace,character-method Man page
getKeywords,flowJoWorkspace,numeric-method Man page
getLoglevel Man page
getNodes Man page
getNodes,GatingSet-method Man page
getParent Man page
getParent,GatingSet,character-method Man page
getPopStats Man page
getPopStats,GatingHierarchy-method Man page
getPopStats,GatingSetList-method Man page
getPopStats,GatingSet-method Man page
getProp Man page
getProp,GatingHierarchy,character-method Man page
getSampleGroups Man page
getSampleGroups,flowJoWorkspace-method Man page
getSamples Man page
getSamples,flowJoWorkspace-method Man page
getSingleCellExpression Man page
getSingleCellExpression,GatingSet,character-method Man page
getSingleCellExpression,GatingSetList,character-method Man page
getTotal Man page
getTotal,GatingHierarchy,character-method Man page
getTransformations Man page
getTransformations,GatingHierarchy-method Man page
groupByChannels Man page
groupByTree Man page
insertGate Man page
isNcdf Man page
keyword Man page
keyword,GatingHierarchy,character-method Man page
keyword,GatingHierarchy,missing-method Man page
keyword,GatingSet,character-method Man page
keyword,GatingSetList,character-method Man page
keyword,GatingSetList,missing-method Man page
keyword,GatingSet,missing-method Man page
lapply,GatingSet-method Man page
length Man page
length,GatingSet-method Man page
load_gs Man page
load_gslist Man page
logicleGml2_trans Man page
logicle_trans Man page
markernames<-,GatingHierarchy-method Man page
markernames,GatingHierarchy-method Man page
markernames<-,GatingSet-method Man page
markernames,GatingSet-method Man page
merge-GatingSet Man page
mkformula Man page
ncFlowSet Man page
ncFlowSet<- Man page
ncFlowSet<-,GatingSet-method Man page
ncFlowSet,GatingSet-method Man page
openWorkspace Man page
openWorkspace,character-method Man page
parseWorkspace Man page
parseWorkspace,flowJoWorkspace-method Man page
pData Man page
pData<- Man page
pData,GatingHierarchy-method Man page
pData<-,GatingSet,data.frame-method Man page
pData<-,GatingSetList,data.frame-method Man page
pData,GatingSet-method Man page
plot Man page
plotGate Man page
plotGate,GatingHierarchy,character-method Man page
plotGate,GatingHierarchy,missing-method Man page
plotGate,GatingHierarchy,numeric-method Man page
plotGate,GatingSet,character-method Man page
plotGate,GatingSetList,character-method Man page
plotGate,GatingSet,missing-method Man page
plotGate,GatingSet,numeric-method Man page
plotGate-methods Man page
plot,GatingSet,character-method Man page
plot,GatingSet,missing-method Man page
plotPopCV Man page
plotPopCV,GatingHierarchy-method Man page
plotPopCV,GatingSet-method Man page
prettyAxis Man page
rbind2,GatingSetList,missing-method Man page
recompute Man page
recompute,GatingSetList-method Man page
recompute,GatingSet-method Man page
Rm Man page
Rm,character,GatingHierarchy,character-method Man page
Rm,character,GatingSet,character-method Man page
Rm,character,GatingSetList,character-method Man page
sampleNames Man page
sampleNames<- Man page
sampleNames,GatingHierarchy-method Man page
sampleNames<-,GatingSet,ANY-method Man page
sampleNames<-,GatingSet-method Man page
sampleNames,GatingSet-method Man page
save_gs Man page
save_gslist Man page
setGate Man page
setGate,GatingHierarchy,character,filter-method Man page
setGate,GatingSet,character,filterList-method Man page
setGate,GatingSet,character,list-method Man page
setLoglevel Man page
setNode Man page
setNode,GatingHierarchy,character,character-method Man page
setNode,GatingHierarchy,character,logical-method Man page
setNode,GatingSet,character,ANY-method Man page
show,booleanFilter-method Man page
show,flowJoWorkspace-method Man page
show,GatingHierarchy-method Man page
show,GatingSet-method Man page
standardize-GatingSet Man page
subset.GatingSet Man page
transformerList Man page
transform,GatingSetList-method Man page
transform,GatingSet-method Man page
updateChannels Man page

Files

flowWorkspace/DESCRIPTION
flowWorkspace/INSTALL
flowWorkspace/NAMESPACE
flowWorkspace/R
flowWorkspace/R/AllClasses.R flowWorkspace/R/AllGenerics.R flowWorkspace/R/GatingHierarchy_Methods.R flowWorkspace/R/GatingSetList_Methods.R flowWorkspace/R/GatingSet_Methods.R flowWorkspace/R/RcppExports.R flowWorkspace/R/add_Methods.R flowWorkspace/R/filterObject_Methods.R flowWorkspace/R/flowJoWorkspace_Methods.R flowWorkspace/R/flow_trans.R flowWorkspace/R/merge_GatingSet.R flowWorkspace/R/setGate_Methods.R flowWorkspace/R/utils.R flowWorkspace/R/zzz.R
flowWorkspace/README.md
flowWorkspace/build
flowWorkspace/build/vignette.rds
flowWorkspace/cleanup
flowWorkspace/configure
flowWorkspace/configure.ac
flowWorkspace/example
flowWorkspace/inst
flowWorkspace/inst/NEWS
flowWorkspace/inst/cppTest
flowWorkspace/inst/cppTest/unitTest
flowWorkspace/inst/cppTest/unitTest/computeCalibrationTable.cpp
flowWorkspace/inst/cppTest/unitTest/cpConstructorTest.cpp
flowWorkspace/inst/cppTest/unitTest/gatingSet_test.cpp
flowWorkspace/inst/cppTest/unitTest/ncdfFlow.cpp
flowWorkspace/inst/cppTest/unitTest/ncdfFlow.hpp
flowWorkspace/inst/cppTest/unitTest/ncdf_test.cpp
flowWorkspace/inst/cppTest/unitTest/spline_test.cpp
flowWorkspace/inst/cppTest/unitTest/src.cpp
flowWorkspace/inst/cppTest/unitTest/testSuite.cpp
flowWorkspace/inst/cppTest/unitTest/test_header.hpp
flowWorkspace/inst/doc
flowWorkspace/inst/doc/HowToMergeGatingSet.R
flowWorkspace/inst/doc/HowToMergeGatingSet.Rmd
flowWorkspace/inst/doc/HowToMergeGatingSet.html
flowWorkspace/inst/doc/plotGate.R
flowWorkspace/inst/doc/plotGate.Rmd
flowWorkspace/inst/doc/plotGate.html
flowWorkspace/inst/extdata
flowWorkspace/inst/extdata/empty_workspace_9.2.xml
flowWorkspace/inst/include
flowWorkspace/inst/include/flowWorkspace
flowWorkspace/inst/include/flowWorkspace.h
flowWorkspace/inst/javascript
flowWorkspace/inst/javascript/showPlot.js
flowWorkspace/inst/tests
flowWorkspace/inst/tests/expect_result
flowWorkspace/man
flowWorkspace/man/GatingHierarchy-class.Rd flowWorkspace/man/GatingSet-class.Rd flowWorkspace/man/GatingSet-methods.Rd flowWorkspace/man/GatingSetList-class.Rd flowWorkspace/man/add.Rd flowWorkspace/man/asinh_Gml2.Rd flowWorkspace/man/asinhtGml2_trans.Rd flowWorkspace/man/booleanFilter-class.Rd flowWorkspace/man/checkRedundantNodes.Rd flowWorkspace/man/clone.Rd flowWorkspace/man/compensate.Rd flowWorkspace/man/dropRedundantChannels.Rd flowWorkspace/man/dropRedundantNodes.Rd flowWorkspace/man/estimateLogicle.GatingHierarchy.Rd flowWorkspace/man/filterObject.Rd flowWorkspace/man/flowData.Rd flowWorkspace/man/flowJo.fasinh.Rd flowWorkspace/man/flowJoTrans.Rd flowWorkspace/man/flowJoWorkspace-class.Rd flowWorkspace/man/flowJo_biexp_trans.Rd flowWorkspace/man/flowJo_fasinh_trans.Rd flowWorkspace/man/flowWorkspace-package.Rd flowWorkspace/man/flowWorkspace.par.get.Rd flowWorkspace/man/flowWorkspace.par.init.Rd flowWorkspace/man/flow_breaks.Rd flowWorkspace/man/flow_trans.Rd flowWorkspace/man/getCompensationMatrices.Rd flowWorkspace/man/getData-methods.Rd flowWorkspace/man/getFJWSubsetIndices.Rd flowWorkspace/man/getGate.Rd flowWorkspace/man/getIndiceMat.Rd flowWorkspace/man/getIndices-GatingSet-name-method.Rd flowWorkspace/man/getIndices.Rd flowWorkspace/man/getKeywords.Rd flowWorkspace/man/getNodes.Rd flowWorkspace/man/getParent.Rd flowWorkspace/man/getPopStats.Rd flowWorkspace/man/getSampleGroups.Rd flowWorkspace/man/getSamples.Rd flowWorkspace/man/getSingleCellExpression.Rd flowWorkspace/man/getTransformations.Rd flowWorkspace/man/groupByChannels.Rd flowWorkspace/man/groupByTree.Rd flowWorkspace/man/insertGate.Rd flowWorkspace/man/isNcdf.Rd flowWorkspace/man/keyword.Rd flowWorkspace/man/lapply-methods.Rd flowWorkspace/man/length.Rd flowWorkspace/man/logicleGml2_trans.Rd flowWorkspace/man/logicle_trans.Rd flowWorkspace/man/loglevel.Rd flowWorkspace/man/markernames.Rd flowWorkspace/man/mkformula.Rd flowWorkspace/man/ncFlowSet-methods.Rd flowWorkspace/man/openWorkspace.Rd flowWorkspace/man/pData-methods.Rd flowWorkspace/man/parseWorkspace.Rd flowWorkspace/man/plot-methods.Rd flowWorkspace/man/plotGate-methods.Rd flowWorkspace/man/plotPopCV.Rd flowWorkspace/man/prettyAxis.Rd flowWorkspace/man/recompute.Rd flowWorkspace/man/sampleNames.Rd flowWorkspace/man/save_gs.Rd flowWorkspace/man/setGate.Rd flowWorkspace/man/setNode-methods.Rd flowWorkspace/man/standardize-GatingSet.Rd flowWorkspace/man/subset.Rd flowWorkspace/man/transform.Rd flowWorkspace/man/transformerList.Rd flowWorkspace/man/updateChannels.Rd
flowWorkspace/src
flowWorkspace/src/GatingHierarchy.cpp
flowWorkspace/src/GatingSet.cpp
flowWorkspace/src/GatingSet.pb.cc
flowWorkspace/src/GatingSet.pb.h
flowWorkspace/src/GatingSet.proto
flowWorkspace/src/GatingSet_pb2.py
flowWorkspace/src/Makevars.in
flowWorkspace/src/Makevars.win
flowWorkspace/src/POPINDICES.cpp
flowWorkspace/src/R_API.cpp
flowWorkspace/src/R_GatingHierarchy.cpp
flowWorkspace/src/R_GatingSet.cpp
flowWorkspace/src/RcppExports.cpp
flowWorkspace/src/boost_serialization
flowWorkspace/src/boost_serialization/boost
flowWorkspace/src/boost_serialization/boost/archive
flowWorkspace/src/boost_serialization/boost/serialization
flowWorkspace/src/calibrationTable.cpp
flowWorkspace/src/compensation.cpp
flowWorkspace/src/delimitedMessage.cpp
flowWorkspace/src/ellipse2points.cpp
flowWorkspace/src/flowData.cpp
flowWorkspace/src/flowJoWorkspace.cpp
flowWorkspace/src/gate.cpp
flowWorkspace/src/global.cpp
flowWorkspace/src/include
flowWorkspace/src/include/GatingHierarchy.hpp
flowWorkspace/src/include/GatingSet.hpp
flowWorkspace/src/include/POPINDICES.hpp
flowWorkspace/src/include/calibrationTable.hpp
flowWorkspace/src/include/compensation.hpp
flowWorkspace/src/include/delimitedMessage.hpp
flowWorkspace/src/include/ellipse2points.hpp
flowWorkspace/src/include/flowData.hpp
flowWorkspace/src/include/flowJoWorkspace.hpp
flowWorkspace/src/include/gate.hpp
flowWorkspace/src/include/global.hpp
flowWorkspace/src/include/macFlowJoWorkspace.hpp
flowWorkspace/src/include/nodeProperties.hpp
flowWorkspace/src/include/populationTree.hpp
flowWorkspace/src/include/spline.hpp
flowWorkspace/src/include/transformation.hpp
flowWorkspace/src/include/winFlowJoWorkspace.hpp
flowWorkspace/src/include/workspace.hpp
flowWorkspace/src/include/wsNode.hpp
flowWorkspace/src/macFlowJoWorkspace.cpp
flowWorkspace/src/nodeProperties.cpp
flowWorkspace/src/pb_build
flowWorkspace/src/pb_build/Makefile
flowWorkspace/src/pb_build/config.h
flowWorkspace/src/pb_build/config.log
flowWorkspace/src/pb_build/config.status
flowWorkspace/src/pb_build/libtool
flowWorkspace/src/pb_build/protobuf-lite.pc
flowWorkspace/src/pb_build/protobuf.pc
flowWorkspace/src/pb_build/src
flowWorkspace/src/pb_build/src/.libs
flowWorkspace/src/pb_build/src/.libs/libprotobuf.la
flowWorkspace/src/pb_build/src/.libs/libprotobuf.lai
flowWorkspace/src/pb_build/src/.libs/libprotobuf.so
flowWorkspace/src/pb_build/src/.libs/libprotobuf.so.9
flowWorkspace/src/pb_build/src/.libs/libprotobuf.so.9.0.0
flowWorkspace/src/pb_build/src/Makefile
flowWorkspace/src/pb_build/src/google
flowWorkspace/src/pb_build/src/google/protobuf
flowWorkspace/src/pb_build/src/google/protobuf/.dirstamp
flowWorkspace/src/pb_build/src/google/protobuf/.libs
flowWorkspace/src/pb_build/src/google/protobuf/.libs/descriptor.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/descriptor.pb.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/descriptor_database.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/dynamic_message.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/extension_set.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/extension_set_heavy.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/generated_message_reflection.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/generated_message_util.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/message.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/message_lite.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/reflection_ops.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/repeated_field.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/service.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/text_format.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/unknown_field_set.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/wire_format.o
flowWorkspace/src/pb_build/src/google/protobuf/.libs/wire_format_lite.o
flowWorkspace/src/pb_build/src/google/protobuf/descriptor.lo
flowWorkspace/src/pb_build/src/google/protobuf/descriptor.pb.lo
flowWorkspace/src/pb_build/src/google/protobuf/descriptor_database.lo
flowWorkspace/src/pb_build/src/google/protobuf/dynamic_message.lo
flowWorkspace/src/pb_build/src/google/protobuf/extension_set.lo
flowWorkspace/src/pb_build/src/google/protobuf/extension_set_heavy.lo
flowWorkspace/src/pb_build/src/google/protobuf/generated_message_reflection.lo
flowWorkspace/src/pb_build/src/google/protobuf/generated_message_util.lo
flowWorkspace/src/pb_build/src/google/protobuf/io
flowWorkspace/src/pb_build/src/google/protobuf/io/.dirstamp
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/coded_stream.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/gzip_stream.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/printer.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/strtod.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/tokenizer.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/zero_copy_stream.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/zero_copy_stream_impl.o
flowWorkspace/src/pb_build/src/google/protobuf/io/.libs/zero_copy_stream_impl_lite.o
flowWorkspace/src/pb_build/src/google/protobuf/io/coded_stream.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/gzip_stream.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/printer.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/strtod.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/tokenizer.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/zero_copy_stream.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/zero_copy_stream_impl.lo
flowWorkspace/src/pb_build/src/google/protobuf/io/zero_copy_stream_impl_lite.lo
flowWorkspace/src/pb_build/src/google/protobuf/message.lo
flowWorkspace/src/pb_build/src/google/protobuf/message_lite.lo
flowWorkspace/src/pb_build/src/google/protobuf/reflection_ops.lo
flowWorkspace/src/pb_build/src/google/protobuf/repeated_field.lo
flowWorkspace/src/pb_build/src/google/protobuf/service.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.dirstamp
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/atomicops_internals_x86_gcc.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/atomicops_internals_x86_msvc.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/common.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/once.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/stringprintf.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/structurally_valid.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/strutil.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/.libs/substitute.o
flowWorkspace/src/pb_build/src/google/protobuf/stubs/atomicops_internals_x86_gcc.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/atomicops_internals_x86_msvc.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/common.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/once.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/stringprintf.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/structurally_valid.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/strutil.lo
flowWorkspace/src/pb_build/src/google/protobuf/stubs/substitute.lo
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flowWorkspace/vignettes/flowWorkspace-Introduction.Rmd
flowWorkspace/vignettes/plotGate.Rmd

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