flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Package details

AuthorGreg Finak, Mike Jiang
Bioconductor views DataImport DataRepresentation FlowCytometry ImmunoOncology Preprocessing
MaintainerGreg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>,Jake Wagner <jpwagner@fhcrc.org>
Licensefile LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.