flowWorkspace-deprecated: Deprecated functions in package 'flowWorkspace'.

In flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Description

getStats –> gs(/gh)_pop_get_stats

getProp –> gh_pop_get_proportion

getTotal –> gh_pop_get_count

getPopStats –> gs(/gh)_pop_get_stats

getNodes –> gs_get_pop_paths

getParent –> gs_pop_get_parent

getChildren –> gs_pop_get_children

getGate –> gs(/gh)_get_gate

getIndices –> gh_pop_get_indices

isGated –> gh_pop_is_gated

isNegated –> gh_pop_is_negated

isHidden –> gh_pop_is_hidden

getData –> gs(/gh)_get_data

getTransformations –> gh_get_transformations

getCompensationMatrices –> gh_get_compensations

plotGate –> autoplot

setNode –> gs(/gh)_set_node_name/gs(/gh)_set_node_visible

isNcdf –> gs_is_h5

flowData –> gs_cyto_data

flowData<- –> gs_cyto_data<-

getLoglevel –> get_log_level

setLoglevel –> set_log_level

rbind2 –> gslist_to_gs

filterObject –> filter_to_list

add –> gs_pop_add

Rm –> gs_pop_remove

copyNode –> gh_copy_gate

openWorkspace –> open_flowjo_xml

flowJo.flog –> flowjo_log_trans

flowJoTrans –> flowjo_biexp

flowJo_biexp_trans –> flowjo_biexp_trans

flowJo.fasinh –> flowjo_fasinh

flowJo.fsinh –> flowjo_fsinh

flowJo_fasinh_trans –> flowjo_fasinh_trans

getDescendants –> gh_pop_get_descendants

getSingleCellExpression –> gs_get_singlecell_expression

groupByTree –> gs_split_by_tree

groupByChannels –> gs_split_by_channels

checkRedundantNodes –> gs_check_redundant_nodes

dropRedundantNodes –> gs_remove_redundant_nodes

dropRedundantChannels –> gs_drop_redundant_channels

updateChannels –> gs_update_channels

moveNode –> gh_pop_move

setGate –> gs(/gh)_pop_set_gate

updateIndices –> gh_pop_set_indices

getMergedStats –> gs_pop_get_count_with_meta

set.count.xml –> gh_pop_set_xml_count

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.