Files in flowWorkspace

Infrastructure for representing and interacting with gated and ungated cytometry data sets.

NEWS.md

logo_mid.png

logo.png

README.md

NAMESPACE

DESCRIPTION

INSTALL

LICENSE

build/vignette.rds

src/R_GatingSet.cpp

src/getDescendants.cpp

src/R_GatingHierarchy.cpp

src/Makevars.win

src/RcppExports.cpp

src/cytoframeAPI.cpp

src/Makevars

src/getPopStats.cpp

src/setCounts.cpp

src/cytosetAPI.cpp

src/R_API.cpp

src/h5_error_r_handler.cpp

src/getSingleCellExpression.cpp

R/load_fcs.R R/filterObject_Methods.R R/setGate_Methods.R R/GatingSet_Methods.R R/RcppExports.R R/utils.R R/moveNode.R R/identifier.R R/cytoframe.R R/GatingHierarchy_Methods.R R/merge_gslist.R R/getDescendants.R R/cytoset.R R/getSingleCellExpression.R R/merge_GatingSet.R R/zzz.R R/parse_transformer.R R/AllClasses.R R/copyNode.R R/updateIndices.R R/load_gs.R R/getStats.R R/deprecated.R R/GatingSetList_Methods.R R/add_Methods.R R/flow_trans.R man-roxygen/template-depr_fun.R man-roxygen/template-depr_pkg.R vignettes/HowToMergeGatingSet.Rmd vignettes/flowWorkspace-Introduction.Rmd man/keyword.Rd man/gs_pop_get_count_fast.Rd man/default_backend.Rd man/filter_to_list.Rd man/gs_pop_set_gate.Rd man/compensate.Rd man/gs_check_redundant_nodes.Rd man/gh_pop_move.Rd man/load_cytoframe.Rd man/gs_pop_get_stats.Rd man/shift_gate.Rd man/gs_get_compensation_internal.Rd man/pData-methods.Rd man/gs_cyto_data.Rd man/sampleNames.Rd man/flowWorkspace-deprecated.Rd man/gh_pop_get_proportion.Rd man/delete_gs.Rd man/cf_write_h5.Rd man/GatingSetList-class.Rd man/gs_split_by_channels.Rd man/flowjo_fasinh_trans.Rd man/gh_pop_get_indices_mat.Rd man/gs_plot_pop_count_cv.Rd man/gs_remove_redundant_nodes.Rd man/standardize-GatingSet.Rd man/transform_gate.Rd man/cs_set_cytoframe.Rd man/gh_pop_set_xml_count.Rd man/gs_plot_diff_tree.Rd man/convert_legacy.Rd man/gh_get_compensations.Rd man/merge_list_to_gs.Rd man/keyword-mutators.Rd man/identifier-methods.Rd man/subset.Rd man/GatingSet-methods.Rd man/convert.Rd man/load_cytoframe_from_fcs.Rd man/cs_get_uri.Rd man/cytoframe-labels.Rd man/flow_trans.Rd man/cf_write_disk.Rd man/flowjo_biexp.Rd man/gs_get_pop_paths.Rd man/flowjo_log_trans.Rd man/gs_remove_redundant_channels.Rd man/cytoset.Rd man/length.Rd man/recompute.Rd man/plotGate-methods-defunct.Rd man/lock.Rd man/gh_get_transformations.Rd man/gh_apply_to_cs.Rd man/gs_get_singlecell_expression.Rd man/cytoframe.Rd man/gs_pop_set_visibility.Rd man/gh_pop_get_cluster_name.Rd man/scale_gate.Rd man/gs_pop_set_name.Rd man/gh_pop_get_data.Rd man/gs_split_by_tree.Rd man/gh_get_cluster_labels.Rd man/GatingSet-class.Rd man/estimateLogicle.Rd man/asinh_Gml2.Rd man/swap_data_cols.Rd man/flow_breaks.Rd man/flowjo_fasinh.Rd man/is_subsetted.Rd man/flowjo_biexp_trans.Rd man/cf_get_uri.Rd man/cleanup.Rd man/asinhtGml2_trans.Rd man/gh_copy_gate.Rd man/booleanFilter-class.Rd man/openWorkspace.Rd man/cleanup_temp.Rd man/markernames.Rd man/save_cytoset.Rd man/cf_append_cols.Rd man/lapply-methods.Rd man/gh_apply_to_new_fcs.Rd man/gs_pop_get_gate.Rd man/transform.Rd man/load_cytoset_from_fcs.Rd man/logicle_trans.Rd man/prettyAxis.Rd man/gslist_to_gs.Rd man/gh_pop_get_indices.Rd man/logicleGml2_trans.Rd man/load_meta.Rd man/rotate_gate.Rd man/gs_pop_get_stats_tfilter.Rd man/gh_pop_compare_stats.Rd man/flowWorkspace-package.Rd man/gs_get_leaf_nodes.Rd man/convert_backend.Rd man/gs_pop_get_gs.Rd man/GatingHierarchy-class.Rd man/gh_pop_set_indices.Rd man/save_gs.Rd man/cf_backend_type.Rd man/loglevel.Rd man/plot-methods.Rd man/gs_is_persistent.Rd man/extract_cluster_pop_name_from_node.Rd man/gh_pop_get_full_path.Rd man/gs_pop_get_children.Rd man/transformerList.Rd man/nodeflags.Rd man/stats.fun.Rd man/gs_update_channels.Rd man/gs_pop_add.Rd man/cs_add_cytoframe.Rd man/cf_write_tile.Rd man/is_tiledb_support.Rd man/ncFlowSet-methods.Rd man/gh_pop_get_descendants.Rd man/logtGml2_trans.Rd man/brackets.Rd man/pop_add.Rd tests/testthat.R tests/testthat/copy_gate.R tests/testthat/GatingSet-testSuite.R tests/testthat/gh_pop_move.R tests/testthat/scale_gate.R tests/testthat/s3-gs.R tests/testthat/gs-parsed.R tests/testthat/cytoset-suite.R tests/testthat/copy-gh.R tests/testthat/gs-archive.R tests/testthat/cleanup_temp.R tests/testthat/filter_to_list.R tests/testthat/cytoframe-suite.R tests/testthat/IO-testSuite.R tests/testthat/test-main.R tests/testthat/convert-legacy.R tests/testthat/gs_pop_get_count_fast.R tests/testthat/parallel_load_gs.R tests/testthat/write.FCS.R tests/testthat/helper-expectResult.R tests/testthat/helper_equal_function.R tests/testthat/comp-trans-gs.R tests/testthat/pop-add.R tests/testthat/GatingHierarchy-testSuite.R

tests/testthat/expect_result/getGate_gs_ellipse.rds

tests/testthat/expect_result/layoutGraph_gh.rds

tests/testthat/expect_result/getAllDescendants_cd4_gh.rds

tests/testthat/expect_result/empty_pop.rds

tests/testthat/expect_result/getCompensationMatrices_gh.rds

tests/testthat/expect_result/cv_gs.csv

tests/testthat/expect_result/getIndice_singlet_gh.rds

tests/testthat/expect_result/getIndiceMat_gh.rds

tests/testthat/expect_result/kw_gs.rds

tests/testthat/expect_result/getPopStats_gs.csv

tests/testthat/expect_result/cv_gh.rds

tests/testthat/expect_result/getTransformations_gh.rds

tests/testthat/expect_result/getGraph_gh.rds

tests/testthat/expect_result/getData_COMPASS_gs.rds

tests/testthat/expect_result/getPopStats_gh.csv

tests/testthat/expect_result/getAllDescendants_cd8_gh.rds

tests/testthat/expect_result/getGate_gs.rds

tests/testthat/expect_result/getAllDescendants_cd3_gh.rds

tests/testthat/expect_result/getGate_gs_polygon.rds

tests/testthat/expect_result/getAxisLabels_gh.rds

tests/testthat/expect_result/kw_gh.rds

tests/testthat/expect_result/getNodes_gh.rds

tests/testthat/expect_result/getIndices_gs.rds

inst/doc/HowToMergeGatingSet.Rmd

inst/doc/HowToMergeGatingSet.html

inst/doc/flowWorkspace-Introduction.R

inst/doc/flowWorkspace-Introduction.html

inst/doc/HowToMergeGatingSet.R inst/doc/flowWorkspace-Introduction.Rmd

inst/javascript/showPlot.js

inst/extdata/empty_workspace_9.2.xml

inst/include/flowWorkspace.h

inst/include/flowWorkspace/convert_trans.h

inst/include/flowWorkspace/pairVectorRcppWrap.h

inst/include/flowWorkspace/list_to_comp.h

inst/include/flowWorkspace/convert_to_str_idx.h

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.