Files in flowWorkspace
Infrastructure for representing and interacting with the gated cytometry

configure.ac
configure
DESCRIPTION
INSTALL
README.md
cleanup
NAMESPACE
build/vignette.rds
tests/testthat.R tests/testthat/flowJoWorkspace-testSuite.R tests/testthat/GatingSet-testSuite.R tests/testthat/test-moveNode.R tests/testthat/test-parseWorkspace.R tests/testthat/test-compensate.R tests/testthat/GatingSetList-testSuite.R tests/testthat/GatingHierarchy-testSuite.R tests/testthat/test-filterObject.R tests/testthat/helper-expectResult.R tests/testthat/test-getPopStats.R tests/testthat/test-merge.R tests/testthat/InternalTestSuite.R tests/testthat/test-archive.R tests/testthat/test-add.R tests/testthat/test-misc.R
tests/testthat/expect_result/getGate_gs_polygon.rds
tests/testthat/expect_result/getGate_gs.rds
tests/testthat/expect_result/getAllDescendants_cd4_gh.rds
tests/testthat/expect_result/layoutGraph_gh.rds
tests/testthat/expect_result/getTransformations_gh.rds
tests/testthat/expect_result/getGate_gs_ellipse.rds
tests/testthat/expect_result/getIndiceMat_gh.rds
tests/testthat/expect_result/getGraph_gh.rds
tests/testthat/expect_result/kw_gh.rds
tests/testthat/expect_result/flowJoWorkspace_expect.rds
tests/testthat/expect_result/kw_gs.rds
tests/testthat/expect_result/getIndice_singlet_gh.rds
tests/testthat/expect_result/getAllDescendants_cd3_gh.rds
tests/testthat/expect_result/getIndices_gs.rds
tests/testthat/expect_result/cv_gs.csv
tests/testthat/expect_result/getData_COMPASS_gs.rds
tests/testthat/expect_result/cv_gh.rds
tests/testthat/expect_result/getPopStats_gh.csv
tests/testthat/expect_result/getPopStats_gs.csv
tests/testthat/expect_result/getAxisLabels_gh.rds
tests/testthat/expect_result/getNodes_gh.rds
tests/testthat/expect_result/getAllDescendants_cd8_gh.rds
tests/testthat/expect_result/getCompensationMatrices_gh.rds
vignettes/flowWorkspace-Introduction.Rmd vignettes/plotGate.Rmd vignettes/HowToMergeGatingSet.Rmd man/ncFlowSet-methods.Rd man/dropRedundantNodes.Rd man/dropRedundantChannels.Rd man/GatingSet-methods.Rd man/getParent.Rd man/flowJoTrans.Rd man/logicleGml2_trans.Rd man/plot-methods.Rd man/flowWorkspace-package.Rd man/asinh_Gml2.Rd man/updateChannels.Rd man/estimateLogicle.GatingHierarchy.Rd man/getKeywords.Rd man/flowWorkspace.par.init.Rd man/subset.Rd man/flowData.Rd man/transform.Rd man/asinhtGml2_trans.Rd man/prettyAxis.Rd man/flowWorkspace.par.get.Rd man/loglevel.Rd man/isNcdf.Rd man/plotGate-methods.Rd man/flow_trans.Rd man/length.Rd man/getData-methods.Rd man/getTransformations.Rd man/getIndiceMat.Rd man/getIndices-GatingSet-name-method.Rd man/clone.Rd man/getSingleCellExpression.Rd man/logicle_trans.Rd man/getSampleGroups.Rd man/getNodes.Rd man/add.Rd man/getIndices.Rd man/setGate.Rd man/flowJo_biexp_trans.Rd man/recompute.Rd man/GatingSet-class.Rd man/GatingHierarchy-class.Rd man/lapply-methods.Rd man/getFJWSubsetIndices.Rd man/parseWorkspace.Rd man/keyword.Rd man/moveNode.Rd man/plotPopCV.Rd man/flowJoWorkspace-class.Rd man/flowJo_fasinh_trans.Rd man/openWorkspace.Rd man/mkformula.Rd man/booleanFilter-class.Rd man/getPopStats.Rd man/insertGate.Rd man/getCompensationMatrices.Rd man/transformerList.Rd man/sampleNames.Rd man/GatingSetList-class.Rd man/standardize-GatingSet.Rd man/filterObject.Rd man/flowJo.fasinh.Rd man/checkRedundantNodes.Rd man/flow_breaks.Rd man/groupByChannels.Rd man/markernames.Rd man/set.count.xml.Rd man/getSamples.Rd man/pData-methods.Rd man/setNode-methods.Rd man/compensate.Rd man/getGate.Rd man/getMergedStats.Rd man/save_gs.Rd man/groupByTree.Rd
inst/NEWS
inst/include/flowWorkspace.h
inst/include/flowWorkspace/workspace.hpp
inst/include/flowWorkspace/wsNode.hpp
inst/include/flowWorkspace/flowJoWorkspace.hpp
inst/include/flowWorkspace/ws2gh.hpp
inst/include/flowWorkspace/ws2gs.hpp
inst/include/flowWorkspace/macFlowJoWorkspace.hpp
inst/include/flowWorkspace/winFlowJoWorkspace.hpp
inst/cppTest/unitTest/src.cpp
inst/cppTest/unitTest/computeCalibrationTable.cpp
inst/cppTest/unitTest/gatingSet_test.cpp
inst/cppTest/unitTest/cpConstructorTest.cpp
inst/cppTest/unitTest/spline_test.cpp
inst/cppTest/unitTest/ncdfFlow.cpp
inst/cppTest/unitTest/testSuite.cpp
inst/cppTest/unitTest/ncdfFlow.hpp
inst/cppTest/unitTest/test_header.hpp
inst/cppTest/unitTest/ncdf_test.cpp
inst/javascript/showPlot.js
inst/doc/plotGate.R inst/doc/flowWorkspace-Introduction.Rmd inst/doc/HowToMergeGatingSet.R
inst/doc/plotGate.html
inst/doc/HowToMergeGatingSet.Rmd
inst/doc/flowWorkspace-Introduction.html
inst/doc/HowToMergeGatingSet.html
inst/doc/plotGate.Rmd inst/doc/flowWorkspace-Introduction.R
inst/extdata/empty_workspace_9.2.xml
R/GatingHierarchy_Methods.R R/AllGenerics.R R/GatingSet_Methods.R R/zzz.R R/flow_trans.R R/flowJoWorkspace_Methods.R R/filterObject_Methods.R R/getSingleCellExpression.R R/setGate_Methods.R R/RcppExports.R R/merge_GatingSet.R R/GatingSetList_Methods.R R/AllClasses.R R/add_Methods.R R/moveNode.R R/utils.R
src/workspace.cpp
src/R_GatingHierarchy.cpp
src/getSingleCellExpression.cpp
src/Makevars.in
src/R_GatingSet.cpp
src/RcppExports.cpp
src/R_API.cpp
src/ws2gh.cpp
src/ws2gs.cpp
src/wsNode.cpp
src/macFlowJoWorkspace.cpp
src/flowJoWorkspace.cpp
src/Makevars.win
src/setCounts.cpp
src/winFlowJoWorkspace.cpp
flowWorkspace documentation built on Nov. 17, 2017, 1:47 p.m.