plot-methods: plot a gating tree

In flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Description

Plot a tree/graph representing the GatingHierarchy

Usage

plot(x,y, ...)

Arguments

x	GatingHierarchy or GatingSet. If GatingSet, the first sample will be used to extract gating tree.
y	missing or character specifies.
...	other arguments: boolean: TRUE|FALSE logical specifying whether to plot boolean gate nodes. Defaults to FALSE. showHidden: TRUE|FALSE logical whether to show hidden nodes layout: See layoutGraph in package Rgraphviz width: See layoutGraph in package Rgraphviz height: See layoutGraph in package Rgraphviz fontsize: See layoutGraph in package Rgraphviz labelfontsize: See layoutGraph in package Rgraphviz fixedsize: See layoutGraph in package Rgraphviz

Examples

## Not run: 
 #gs is a GatingSet
 plot(gs) # the same as plot(gs[[1]])
 #plot a substree rooted from 'CD4'
 plot(gs, "CD4")


## End(Not run)

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.