plot-methods: plot a gating tree

Description Usage Arguments Examples

Description

Plot a tree/graph representing the GatingHierarchy

Usage

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## S4 method for signature 'GatingSet,missing'
plot(x, y, ...)

## S4 method for signature 'GatingSet,character'
plot(x, y, ...)

Arguments

x

GatingHierarchy or GatingSet. If GatingSet, the first sample will be used to extract gating tree.

y

missing or character specifies.

...

other arguments:

  • boolean: TRUE|FALSE logical specifying whether to plot boolean gate nodes. Defaults to FALSE.

  • showHidden: TRUE|FALSE logical whether to show hidden nodes

  • layout: See layoutGraph in package Rgraphviz

  • width: See layoutGraph in package Rgraphviz

  • height: See layoutGraph in package Rgraphviz

  • fontsize: See layoutGraph in package Rgraphviz

  • labelfontsize: See layoutGraph in package Rgraphviz

  • fixedsize: See layoutGraph in package Rgraphviz

Examples

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## Not run: 
 #gs is a GatingSet
 plot(gs) # the same as plot(gs[[1]])
 #plot a substree rooted from 'CD4'
 plot(gs, "CD4")


## End(Not run)

flowWorkspace documentation built on May 5, 2018, 2:02 a.m.