gh_apply_to_cs: Construct a 'GatingSet' using a template

In flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Description

This uses a GatingHierarchy as a template to apply to other loaded samples in the form of a cytoset, resulting in a GatingSet. The transformations and gates from the template are applied to all samples. The compensation applied to each of the samples can be controlled via the compensation_source argument.

Usage

gh_apply_to_cs(x, cs, swap_cols = FALSE, compensation_source = "sample", ...)

Arguments

x	GatingHierarchy
cs	a cytoset
swap_cols	for internal usage
compensation_source	One of the following options: "sample" – each cytoframe will be compensated with the spillover matrix included in its own FCS "template" – all cytoframes will be compensatied with the spillover matrix of the template GatingHierarchy "none" – no compensation will be applied
...	not currently used

Value

a GatingSet

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.