logicleGml2_trans: GatingML2 version of logicle transformation.

In flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Description

The only difference from logicle_trans is it is scaled to c(0,1) range.

Usage

logicleGml2_trans(
  T = 262144,
  M = 4.5,
  W = 0.5,
  A = 0,
  n = 6,
  equal.space = FALSE
)

Arguments

T, M, W, A	see logicletGml2
n	desired number of breaks (the actual number will be different depending on the data range)
equal.space	whether breaks at equal-spaced intervals

Value

a logicleGml2 transformation object

Examples

trans.obj <- logicleGml2_trans(equal.space = TRUE)
data <- 1:1e3
brks.func <- trans.obj[["breaks"]]
brks <- brks.func(data)
brks # logicle space displayed at raw data scale
#transform it to verify the equal-spaced breaks at transformed scale
print(trans.obj[["transform"]](brks))

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.