gs_pop_set_gate: update the gate

In flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Description

update the population node with a flowCore-compatible gate object

Usage

gh_pop_set_gate(obj, y, value, negated = FALSE, ...)

gs_pop_set_gate(obj, y, value, ...)

Arguments

obj	GatingHierarchy or GatingSet
y	character node name or path
value	filter or filterList or list of filter objects
negated	logical see add
...	other aguments

Details

Usually recompute is followed by this call since updating a gate doesn't re-calculating the cell events within the gate automatically. see filterObject for the gate types that are currently supported.

Examples

## Not run:   
rg1 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle")
rg2 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle")
flist <- list(rg1,rg2)
names(flist) <- sampleNames(gs[1:2])
gs_pop_set_gate(gs[1:2], "lymph", flist)
recompute(gs[1:2], "lymph") 

## End(Not run)

flowWorkspace documentation built on Nov. 8, 2020, 8:08 p.m.