paolopavan/medips: DNA IP-seq data analysis

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.

Getting started

Package details

AuthorLukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado
Bioconductor views ChIPSeq CopyNumberVariation Coverage CpGIsland DNAMethylation DifferentialExpression Genetics GenomeAnnotation Microarray Preprocessing QualityControl SequenceMatching Sequencing Visualization
MaintainerLukas Chavez <>
LicenseGPL (>=2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
paolopavan/medips documentation built on May 24, 2019, 6:14 p.m.