qpcrNorm: Data-driven normalization strategies for high-throughput qPCR data.

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The package contains functions to perform normalization of high-throughput qPCR data. Basic functions for processing raw Ct data plus functions to generate diagnostic plots are also available.

Author
Jessica Mar
Date of publication
None
Maintainer
Jessica Mar <jess@jimmy.harvard.edu>
License
LGPL (>= 2)
Version
1.32.0

View on Bioconductor

Man pages

calcCV
Calculates the Average Gene-Specific Coefficient of Variation
ctQc
Quality Control Filter for Replicate Ct Values
matrixByPlate
Internal function to reorganize qPCR data into a rectangular...
normQpcrHouseKeepingGenes
Function for Housekeeping Gene Normalization of qPCR Data.
normQpcrQuantile
Function for Quantile Normalization of qPCR Data.
normQpcrRankInvariant
Function for Rank-Invariant Set Normalization for qPCR Data.
plotVarMean
Constructs scatter plot to compare the effects of two...
qpcrBatch-class
Class qpcrBatch
qpcrBatch.object
qpcrBatch instance qpcrBatch.object
readQpcr
Data Input Function for a Single qPCR Experiment.
readQpcrBatch
Data Input Function for a Batch of qPCR Experiments.
writeQpcr
Writes qpcrBatch object out to a File.

Files in this package

qpcrNorm/DESCRIPTION
qpcrNorm/NAMESPACE
qpcrNorm/R
qpcrNorm/R/qpcrNormsource.R
qpcrNorm/build
qpcrNorm/build/vignette.rds
qpcrNorm/data
qpcrNorm/data/qpcrBatch.object.rda
qpcrNorm/inst
qpcrNorm/inst/doc
qpcrNorm/inst/doc/qpcrNorm.R
qpcrNorm/inst/doc/qpcrNorm.Rnw
qpcrNorm/inst/doc/qpcrNorm.pdf
qpcrNorm/man
qpcrNorm/man/calcCV.Rd
qpcrNorm/man/ctQc.Rd
qpcrNorm/man/matrixByPlate.Rd
qpcrNorm/man/normQpcrHouseKeepingGenes.Rd
qpcrNorm/man/normQpcrQuantile.Rd
qpcrNorm/man/normQpcrRankInvariant.Rd
qpcrNorm/man/plotVarMean.Rd
qpcrNorm/man/qpcrBatch-class.Rd
qpcrNorm/man/qpcrBatch.object.Rd
qpcrNorm/man/readQpcr.Rd
qpcrNorm/man/readQpcrBatch.Rd
qpcrNorm/man/writeQpcr.Rd
qpcrNorm/vignettes
qpcrNorm/vignettes/qpcrNorm.Rnw