matrixByPlate: Internal function to reorganize qPCR data into a rectangular...
In qpcrNorm: Data-driven normalization strategies for high-throughput qPCR data.
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
This function takes a vector of Ct values from a single qPCR experiment and
reorganizes it into a matrix structure. Each column in the matrix represents a
different plate that was used in the experiment.
Usage
1
matrixByPlate(xvec, plateIndex)
Arguments
xvec
Numeric vector of Ct values.
plateIndex
Character vector, denoting plate index of each gene or primer pair.
Details
On the resulting matrix structure:
The number of rows equals the maximum number of genes or primer pairs that were used on a plate in the experiment.
For plates with less genes, NA values are padded at the end of the column vector to complete the rectangular structure.
Note: these NA values do not affect downstream calculations.
Value
A matrix object.
Author(s)
Jess Mar jess@jimmy.harvard.edu
See Also
Examples
1
2
data(qpcrBatch.object)
mynormQuant.data <- normQpcrQuantile(qpcrBatch.object)
qpcrNorm documentation built on Nov. 8, 2020, 4:54 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
This function takes a vector of Ct values from a single qPCR experiment and reorganizes it into a matrix structure. Each column in the matrix represents a different plate that was used in the experiment.
Usage
1 | matrixByPlate(xvec, plateIndex)
|
Arguments
xvec |
Numeric vector of Ct values. |
plateIndex |
Character vector, denoting plate index of each gene or primer pair. |
Details
On the resulting matrix structure:
The number of rows equals the maximum number of genes or primer pairs that were used on a plate in the experiment.
For plates with less genes, NA values are padded at the end of the column vector to complete the rectangular structure.
Note: these NA values do not affect downstream calculations.
Value
A matrix object.
Author(s)
Jess Mar jess@jimmy.harvard.edu
See Also
Examples
1 2 | data(qpcrBatch.object)
mynormQuant.data <- normQpcrQuantile(qpcrBatch.object)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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