This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.
|Author||Sylvain Gubian <DL.RSupport@pmi.com>, Alain Sewer <DL.RSupport@pmi.com>, PMP SA|
|Date of publication||None|
|Maintainer||Sylvain Gubian <DL.RSupport@pmi.com>|
bg.correct.miR: ExiMiR low-level function for background correction
createAB: ExiMiR function for creating an AffyBatch object from other...
ExiMiR-package: R functions for the normalization of Exiqon miRNA array data
galenv: R annotation environment for GEO series GSE20122
GSE19183: Affybatch object for the raw data from GEO series GSE19183
GSE20122: Affybatch object for the raw data from GEO series GSE20122
make.gal.env: GAL Environment Maker
NormiR: ExiMiR high-level function for miRNA raw data normalization.
NormiR.methods: ExiMiR functions for enumerating the names of low-level...
norm.miR: ExiMiR low-level function for miRNA raw data normalization.
ReadExi: ExiMiR function for reading Exiqon raw data into an AffyBatch...
summarize.miR: ExiMiR low-level function for summarization.