ExiMiR: R functions for the normalization of Exiqon miRNA array data

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

AuthorSylvain Gubian <DL.RSupport@pmi.com>, Alain Sewer <DL.RSupport@pmi.com>, PMP SA
Date of publicationNone
MaintainerSylvain Gubian <DL.RSupport@pmi.com>
LicenseGPL-2
Version2.16.0

View on Bioconductor

Files in this package

ExiMiR/DESCRIPTION
ExiMiR/LICENSE
ExiMiR/NAMESPACE
ExiMiR/NEWS
ExiMiR/R
ExiMiR/R/NormiR.R ExiMiR/R/NormiR.methods.R ExiMiR/R/createAB.R ExiMiR/R/make.gal.env.R ExiMiR/R/read.exi.R
ExiMiR/build
ExiMiR/build/vignette.rds
ExiMiR/data
ExiMiR/data/GSE19183.rda
ExiMiR/data/GSE20122.rda
ExiMiR/data/galenv.rda
ExiMiR/inst
ExiMiR/inst/doc
ExiMiR/inst/doc/ExiMiR-vignette.R
ExiMiR/inst/doc/ExiMiR-vignette.Rnw
ExiMiR/inst/doc/ExiMiR-vignette.pdf
ExiMiR/man
ExiMiR/man/ExiMiR-package.Rd ExiMiR/man/GSE19183.Rd ExiMiR/man/GSE20122.Rd ExiMiR/man/NormiR.Rd ExiMiR/man/NormiR.methods.Rd ExiMiR/man/ReadExi.Rd ExiMiR/man/bg.correct.miR.Rd ExiMiR/man/createAB.Rd ExiMiR/man/galenv.Rd ExiMiR/man/make.gal.env.Rd ExiMiR/man/norm.miR.Rd ExiMiR/man/summarize.miR.Rd
ExiMiR/vignettes
ExiMiR/vignettes/ExiMiR-vignette.Rnw
ExiMiR/vignettes/fig0.png
ExiMiR/vignettes/fig1.png
ExiMiR/vignettes/fig2.png
ExiMiR/vignettes/fig3.png
ExiMiR/vignettes/samplesinfo.txt

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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