NormiR.methods: ExiMiR functions for enumerating the names of low-level...

In ExiMiR: R functions for the normalization of Exiqon miRNA array data

Description

These functions enumerate the names of methods or arguments of the low-level functions for miRNA raw data normalization (i.e. background correction, (spike-in probe-based) normalization, PM corrrection, summarization). They take into account how the input AffyBatch object was created as well as the underlying array type.

Usage

NormiR.bgcorrect.methods(object)
NormiR.normalize.methods(object)
NormiR.pmcorrect.methods(object)
NormiR.summary.methods()
NormiR.spikein.args()

Arguments

object

An AffyBatch object.

Details

See accompanying vignette.

Value

List of strings containing the names of the methods or arguments available for the input AffyBatch object.

Author(s)

Sylvain.Gubian, Alain.Sewer, PMP SA

See Also

NormiR, bg.correct.miR, norm.miR, summarize.miR.

ExiMiR documentation built on Nov. 8, 2020, 8:26 p.m.