mzytnicki/srnadiff: Finding differentially expressed unannotated genomic regions from RNA-seq data

srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.

Getting started

Package details

Bioconductor views Coverage DifferentialExpression Epigenetics GeneExpression ImmunoOncology Preprocessing SmallRNA StatisticalMethod
Maintainer
LicenseGPL-3
Version1.13.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("mzytnicki/srnadiff")
mzytnicki/srnadiff documentation built on Sept. 20, 2021, 1:02 p.m.