mzytnicki/srnadiff: Finding differentially expressed unannotated genomic regions from RNA-seq data

srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.

Getting started

Package details

Bioconductor views Coverage DifferentialExpression Epigenetics GeneExpression ImmunoOncology Preprocessing SmallRNA StatisticalMethod
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
mzytnicki/srnadiff documentation built on Sept. 20, 2021, 1:02 p.m.