API for mzytnicki/srnadiff
Differential Expression of Small RNA-Seq

Global functions
buildDataHmm Man page Source code
computePvalues Man page Source code
onUnload Source code
plotRegion Man page Source code
rcpp_buildHmm Man page Source code
rcpp_naive Man page Source code
rcpp_normalization Man page Source code
rcpp_slice Man page Source code
rcpp_viterbi Man page Source code
readAnnotation Man page Source code
readMiRBaseMatureAnnotation Man page Source code
readMiRBasePreAnnotation Man page Source code
readWholeGenomeAnnotation Man page Source code
regions Man page
regions,sRNADiff,ANY-method Man page
regions,sRNADiff,numeric-method Man page
runAll Man page Source code
runAllAnnotation Man page Source code
runAllHmm Man page Source code
runAllNaive Man page Source code
runAllSlice Man page Source code
runHmm Man page Source code
runSlice Man page Source code
sRNADiff-class Man page
sRNADiffExample Man page Source code
sRNADiffExp Man page Source code
setEmissionProbabilities Man page
setEmissionProbabilities,sRNADiff,numeric-method Man page
setEmissionThreshold Man page
setEmissionThreshold,sRNADiff,numeric-method Man page
setMergeDistance Man page
setMergeDistance,sRNADiff,numeric-method Man page
setMinDepth Man page
setMinDepth,sRNADiff,numeric-method Man page
setMinDifferences Man page
setMinDifferences,sRNADiff,numeric-method Man page
setMinOverlap Man page
setMinOverlap,sRNADiff,numeric-method Man page
setNThreads Man page
setNThreads,sRNADiff,numeric-method Man page
setSizes Man page
setSizes,sRNADiff,numeric,numeric-method Man page
setStrategies Man page
setStrategies,sRNADiff,logical,logical,logical,logical-method Man page
setTransitionProbabilities Man page
setTransitionProbabilities,sRNADiff,numeric,numeric-method Man page
show,sRNADiff-method Man page
srnadiff Man page
srnadiff-package Man page
mzytnicki/srnadiff documentation built on Feb. 3, 2018, 11:01 p.m.