regions: Extracts differentially expressed regions of an srnadiffExp...

In mzytnicki/srnadiff: Finding differentially expressed unannotated genomic regions from RNA-seq data

Extracts differentially expressed regions of an srnadiffExp object

Description

This function extracts the differentially expressed regions from srnadiffExp object ranked by p-value.

Usage

## S4 method for signature 'srnadiffExp'
regions(object, pvalue = 1)

Arguments

object	An srnadiffExp object.
pvalue	Numeric cutoff value for adjusted p-values. Only regions with adjusted p-values equal or lower than specified are returned. Default to 1, all regions are returned.

Value

A GenomicRanges object of the selected differentially expressed regions.

Examples

srnaExp <- srnadiffExample()
srnaExp <- srnadiff(srnaExp)
regions(srnaExp, pvalue = 0.05)

mzytnicki/srnadiff documentation built on March 7, 2023, 2:18 a.m.