Files in mzytnicki/srnadiff
Finding differentially expressed unannotated genomic regions from RNA-seq data

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/RcppExports.R R/helper.R R/hmm.R R/methods.R R/naive.R R/plotRegions.R R/readAnnot.R R/slice.R R/srnadiff-package.R R/srnadiff.R R/zzz.R
inst/extdata/Homo_sapiens.GRCh38.76.gtf.gz
inst/extdata/SRR1634756.bam
inst/extdata/SRR1634757.bam
inst/extdata/SRR1634758.bam
inst/extdata/SRR1634759.bam
inst/extdata/SRR1634760.bam
inst/extdata/SRR1634761.bam
inst/extdata/dataInfo.csv
inst/extdata/header.sam
inst/extdata/mirbase21_GRCh38.gff3
inst/extdata/srnadiffExample.rda
man/annotReg.Rd man/bamFiles.Rd man/chromosomeSizes.Rd man/countMatrix.Rd man/coverages.Rd man/normFactors.Rd man/parameters.Rd man/plotRegions.Rd man/readAnnotation.Rd man/regions.Rd man/sampleInfo.Rd man/srnadiff.Rd man/srnadiffDefaultParameters.Rd man/srnadiffExample.Rd man/srnadiffExp.Rd
src/RcppExports.cpp
src/rcpp_hmm.cpp
src/rcpp_ir.cpp
src/rcpp_main.cpp
src/rcpp_utils.cpp
src/srnadiff_init.c
srnadiff.Rproj
tests/testthat.R tests/testthat/test_AllClass.R tests/testthat/test_annotation.R tests/testthat/test_hmm.R tests/testthat/test_plot.R tests/testthat/test_slice.R tests/testthat/test_srnadiff.R
vignettes/references.bib
vignettes/srnadiff.Rmd
mzytnicki/srnadiff documentation built on May 29, 2019, 2:35 p.m.