affyILM: Linear Model of background subtraction and the Langmuir isotherm

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author
K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon
Date of publication
None
Maintainer
Myriam Kroll and Fabrice Berger <fabrice.berger@gmail.com>
License
GPL version 3
Version
1.26.0

View on Bioconductor

Man pages

ilm
affyILM
ILM-class
Class to contain the results of an ilm calculation
ilm-methods
Methods to access the results of ilm.
plotILM
plotILM
plotIntens
plotIntens

Files in this package

affyILM/DESCRIPTION
affyILM/NAMESPACE
affyILM/R
affyILM/R/AllClasses.R
affyILM/R/AllGenerics.R
affyILM/R/affyILM_scale.R
affyILM/R/affyilm.R
affyILM/R/affyilm_internal.R
affyILM/R/affyilm_readIn.R
affyILM/R/methods-ILM.R
affyILM/build
affyILM/build/vignette.rds
affyILM/inst
affyILM/inst/doc
affyILM/inst/doc/affyILM.R
affyILM/inst/doc/affyILM.Rnw
affyILM/inst/doc/affyILM.pdf
affyILM/man
affyILM/man/ILM-class.Rd
affyILM/man/ilm-methods.Rd
affyILM/man/ilm.Rd
affyILM/man/plotILM.Rd
affyILM/man/plotIntens.Rd
affyILM/vignettes
affyILM/vignettes/affyILM.Rnw
affyILM/vignettes/affyILM.bib