AgiMicroRna: Processing and Differential Expression Analysis of Agilent microRNA chips

Processing and Analysis of Agilent microRNA data

AuthorPedro Lopez-Romero <plopez@cnic.es>
Date of publicationNone
MaintainerPedro Lopez-Romero <plopez@cnic.es>
LicenseGPL-3
Version2.24.0

View on Bioconductor

Functions

basicLimma Man page
boxplotMicroRna Man page
cvArray Man page
dd.micro Man page
ddPROC Man page
dimnames<-.uRNAList Man page
dimnames.uRNAList Man page
dim.uRNAList Man page
esetMicroRna Man page
filterMicroRna Man page
getDecideTests Man page
HeatMapMicroRna Man page
hierclusMicroRna Man page
length.uRNAList Man page
mvaBASIC Man page
mvaMicroRna Man page
PCAplotMicroRna Man page
plotDensityMicroRna Man page
pvalHistogram Man page
qcPlots Man page
readMicroRnaAFE Man page
readTargets Man page
RleMicroRna Man page
rmaMicroRna Man page
show,uRNAList-method Man page
significantMicroRna Man page
summary.uRNAList Man page
targets.micro Man page
tgsMicroRna Man page
tgsNormalization Man page
uRNAList-class Man page
writeEset Man page

Files

AgiMicroRna/DESCRIPTION
AgiMicroRna/NAMESPACE
AgiMicroRna/R
AgiMicroRna/R/AgiMicroRNA-classes.R AgiMicroRna/R/DEG.print.info.R AgiMicroRna/R/HeatMapMicroRna.R AgiMicroRna/R/MA.plot.miRNA.R AgiMicroRna/R/PCAplotMicroRna.R AgiMicroRna/R/RleMicroRna.R AgiMicroRna/R/basicLimma.R AgiMicroRna/R/boxplotMicroRna.R AgiMicroRna/R/cv.array.R AgiMicroRna/R/cvArray.R AgiMicroRna/R/esetMicroRna.R AgiMicroRna/R/filter.IsGeneDetected.R AgiMicroRna/R/filter.control.miRNA.R AgiMicroRna/R/filter.wellaboveNEG.miRNA.R AgiMicroRna/R/filterFLAG.micro.R AgiMicroRna/R/filterMicroRna.R AgiMicroRna/R/filterWellAboveSIGNALv2.R AgiMicroRna/R/getDecideTests.R AgiMicroRna/R/getTDRows2.R AgiMicroRna/R/hierclusMicroRna.R AgiMicroRna/R/miRNA.htmlpage.R AgiMicroRna/R/mvaBASIC.R AgiMicroRna/R/mvaMicroRna.R AgiMicroRna/R/paste.character.R AgiMicroRna/R/plotDensityMicroRna.R AgiMicroRna/R/pvalHistogram.R AgiMicroRna/R/qcPlots.R AgiMicroRna/R/read.agiMicroRna.R AgiMicroRna/R/readMicroRnaAFE.R AgiMicroRna/R/readTargets.R AgiMicroRna/R/rmaMicroRna.R AgiMicroRna/R/significantMicroRna.R AgiMicroRna/R/subsetting.R AgiMicroRna/R/tgsMicroRna.R AgiMicroRna/R/tgsNormalization.R AgiMicroRna/R/write.LIST.miRNA.R AgiMicroRna/R/write.control.out.miRNA.R AgiMicroRna/R/write.filt.out.miRNA.R AgiMicroRna/R/writeEset.R
AgiMicroRna/build
AgiMicroRna/build/vignette.rds
AgiMicroRna/data
AgiMicroRna/data/datalist
AgiMicroRna/data/dd.micro.rda
AgiMicroRna/data/ddPROC.rda
AgiMicroRna/data/targets.micro.rda
AgiMicroRna/inst
AgiMicroRna/inst/doc
AgiMicroRna/inst/doc/AgiMicroRna.R
AgiMicroRna/inst/doc/AgiMicroRna.Rnw
AgiMicroRna/inst/doc/AgiMicroRna.pdf
AgiMicroRna/man
AgiMicroRna/man/HeatMapMicroRna.Rd AgiMicroRna/man/PCAplotMicroRna.Rd AgiMicroRna/man/RleMicroRna.Rd AgiMicroRna/man/basicLimma.Rd AgiMicroRna/man/boxplotMicroRna.Rd AgiMicroRna/man/cvArray.Rd AgiMicroRna/man/dd.micro.Rd AgiMicroRna/man/ddPROC.Rd AgiMicroRna/man/dim.uRNAList.Rd AgiMicroRna/man/dimnames.uRNAList.Rd AgiMicroRna/man/esetMicroRna.Rd AgiMicroRna/man/filterMicroRna.Rd AgiMicroRna/man/getDecideTests.Rd AgiMicroRna/man/hierclusMicroRna.Rd AgiMicroRna/man/mvaBASIC.Rd AgiMicroRna/man/mvaMicroRna.Rd AgiMicroRna/man/plotDensityMicroRna.Rd AgiMicroRna/man/pvalHistogram.Rd AgiMicroRna/man/qcPlots.Rd AgiMicroRna/man/readMicroRnaAFE.Rd AgiMicroRna/man/readTargets.Rd AgiMicroRna/man/rmaMicroRna.Rd AgiMicroRna/man/significantMicroRna.Rd AgiMicroRna/man/summary.uRNAList.Rd AgiMicroRna/man/targets.micro.Rd AgiMicroRna/man/tgsMicroRna.Rd AgiMicroRna/man/tgsNormalization.Rd AgiMicroRna/man/uRNAList.Rd AgiMicroRna/man/writeEset.Rd
AgiMicroRna/vignettes
AgiMicroRna/vignettes/AgiMicroRna.Rnw
AgiMicroRna/vignettes/AgiMicroRna.bib

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