AgiMicroRna: Processing and Differential Expression Analysis of Agilent microRNA chips

Processing and Analysis of Agilent microRNA data

AuthorPedro Lopez-Romero <plopez@cnic.es>
Date of publicationNone
MaintainerPedro Lopez-Romero <plopez@cnic.es>
LicenseGPL-3
Version2.24.0

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Files in this package

AgiMicroRna/DESCRIPTION
AgiMicroRna/NAMESPACE
AgiMicroRna/R
AgiMicroRna/R/AgiMicroRNA-classes.R AgiMicroRna/R/DEG.print.info.R AgiMicroRna/R/HeatMapMicroRna.R AgiMicroRna/R/MA.plot.miRNA.R AgiMicroRna/R/PCAplotMicroRna.R AgiMicroRna/R/RleMicroRna.R AgiMicroRna/R/basicLimma.R AgiMicroRna/R/boxplotMicroRna.R AgiMicroRna/R/cv.array.R AgiMicroRna/R/cvArray.R AgiMicroRna/R/esetMicroRna.R AgiMicroRna/R/filter.IsGeneDetected.R AgiMicroRna/R/filter.control.miRNA.R AgiMicroRna/R/filter.wellaboveNEG.miRNA.R AgiMicroRna/R/filterFLAG.micro.R AgiMicroRna/R/filterMicroRna.R AgiMicroRna/R/filterWellAboveSIGNALv2.R AgiMicroRna/R/getDecideTests.R AgiMicroRna/R/getTDRows2.R AgiMicroRna/R/hierclusMicroRna.R AgiMicroRna/R/miRNA.htmlpage.R AgiMicroRna/R/mvaBASIC.R AgiMicroRna/R/mvaMicroRna.R AgiMicroRna/R/paste.character.R AgiMicroRna/R/plotDensityMicroRna.R AgiMicroRna/R/pvalHistogram.R AgiMicroRna/R/qcPlots.R AgiMicroRna/R/read.agiMicroRna.R AgiMicroRna/R/readMicroRnaAFE.R AgiMicroRna/R/readTargets.R AgiMicroRna/R/rmaMicroRna.R AgiMicroRna/R/significantMicroRna.R AgiMicroRna/R/subsetting.R AgiMicroRna/R/tgsMicroRna.R AgiMicroRna/R/tgsNormalization.R AgiMicroRna/R/write.LIST.miRNA.R AgiMicroRna/R/write.control.out.miRNA.R AgiMicroRna/R/write.filt.out.miRNA.R AgiMicroRna/R/writeEset.R
AgiMicroRna/build
AgiMicroRna/build/vignette.rds
AgiMicroRna/data
AgiMicroRna/data/datalist
AgiMicroRna/data/dd.micro.rda
AgiMicroRna/data/ddPROC.rda
AgiMicroRna/data/targets.micro.rda
AgiMicroRna/inst
AgiMicroRna/inst/doc
AgiMicroRna/inst/doc/AgiMicroRna.R
AgiMicroRna/inst/doc/AgiMicroRna.Rnw
AgiMicroRna/inst/doc/AgiMicroRna.pdf
AgiMicroRna/man
AgiMicroRna/man/HeatMapMicroRna.Rd AgiMicroRna/man/PCAplotMicroRna.Rd AgiMicroRna/man/RleMicroRna.Rd AgiMicroRna/man/basicLimma.Rd AgiMicroRna/man/boxplotMicroRna.Rd AgiMicroRna/man/cvArray.Rd AgiMicroRna/man/dd.micro.Rd AgiMicroRna/man/ddPROC.Rd AgiMicroRna/man/dim.uRNAList.Rd AgiMicroRna/man/dimnames.uRNAList.Rd AgiMicroRna/man/esetMicroRna.Rd AgiMicroRna/man/filterMicroRna.Rd AgiMicroRna/man/getDecideTests.Rd AgiMicroRna/man/hierclusMicroRna.Rd AgiMicroRna/man/mvaBASIC.Rd AgiMicroRna/man/mvaMicroRna.Rd AgiMicroRna/man/plotDensityMicroRna.Rd AgiMicroRna/man/pvalHistogram.Rd AgiMicroRna/man/qcPlots.Rd AgiMicroRna/man/readMicroRnaAFE.Rd AgiMicroRna/man/readTargets.Rd AgiMicroRna/man/rmaMicroRna.Rd AgiMicroRna/man/significantMicroRna.Rd AgiMicroRna/man/summary.uRNAList.Rd AgiMicroRna/man/targets.micro.Rd AgiMicroRna/man/tgsMicroRna.Rd AgiMicroRna/man/tgsNormalization.Rd AgiMicroRna/man/uRNAList.Rd AgiMicroRna/man/writeEset.Rd
AgiMicroRna/vignettes
AgiMicroRna/vignettes/AgiMicroRna.Rnw
AgiMicroRna/vignettes/AgiMicroRna.bib

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