esetMicroRna: ExpressionSet object from a uRNAList

In AgiMicroRna: Processing and Differential Expression Analysis of Agilent microRNA chips

Description

It creates an 'ExpressionSet' object from a 'uRNAList' with unique probe names Tipically, the 'uRNAList object' contains the Total Gene Processed data

Usage

esetMicroRna(uRNAList, targets, makePLOT=FALSE,verbose=FALSE)

Arguments

uRNAList	An uRNAList containing normally the processed data
targets	data.frame with the targets structure
makePLOT	logical, if TRUE it makes a 'heatmap' with the 100 greater variance genes, a 'hierarchical cluster' with all the genes and a pca plot
verbose	logical, if TRUE prints out output

Details

It creates an ExpressionSet object from a uRNAList. Usually this function is applied to an uRNAList object containing the Total Gene Processed data.

Value

An ExpressionSet object

Author(s)

Pedro Lopez-Romero

See Also

An 'uRNAList' example containing proccesed data is in ddPROC and an overview of how the processed data is produced is given in filterMicroRna

AgiMicroRna documentation built on Nov. 8, 2020, 5:25 p.m.