nondetects: Non-detects in qPCR data
Version 2.6.0

Methods to model and impute non-detects in the results of qPCR experiments.

AuthorMatthew N. McCall <mccallm@gmail.com>, Valeriia Sherina <valery.sherina@gmail.com>
Bioconductor views AssayDomain GeneExpression Preprocessing Software Technology WorkflowStep qPCR
Date of publicationNone
MaintainerValeriia Sherina <valery.sherina@gmail.com>
LicenseGPL-3
Version2.6.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("nondetects")

Getting started

Non-detects in qPCR data: methods to model and impute non-detects in the results

Popular man pages

nature2008: The qPCR data from McMurray _et al._ Nature 2008.
oncogene2013: The qPCR data from Sampson _et al._ Oncogene 2013.
qpcrImpute: Impute Non-detects in qPCR data
sagmb2011: The qPCR data from Almudevar _et al._ SAGMB 2011.
See all...

All man pages Function index File listing

Man pages

nature2008: The qPCR data from McMurray _et al._ Nature 2008.
oncogene2013: The qPCR data from Sampson _et al._ Oncogene 2013.
qpcrImpute: Impute Non-detects in qPCR data
sagmb2011: The qPCR data from Almudevar _et al._ SAGMB 2011.

Functions

EZ Source code
EZ2 Source code
cpNDz Source code
logLik Source code
multy Source code
nature2008 Man page
oncogene2013 Man page
pND Source code
pNDZ Source code
qpcrImpute Man page Source code
sagmb2011 Man page
updateS2 Source code
updateTheta Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/internal-em-functions.R
R/qpcrImpute.R
data
data/nature2008.rda
data/oncogene2013.rda
data/sagmb2011.rda
inst
inst/CITATION
inst/unitTests
inst/unitTests/test_qpcrImpute.R
man
man/nature2008.Rd
man/oncogene2013.Rd
man/qpcrImpute.Rd
man/sagmb2011.Rd
tests
tests/runTests.R
vignettes
vignettes/nondetects.Rmd
vignettes/nondetects.bib
nondetects documentation built on May 20, 2017, 10:12 p.m.

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