nature2008: The qPCR data from McMurray _et al._ Nature 2008.

In nondetects: Non-detects in qPCR data

Description

A study of the effect of p53 and/or Ras mutations on gene expression. The third dataset is a comparison between four cell types – YAMC cells, mutant-p53 YAMC cells, activated-Ras YAMC cells, and p53/Ras double mutant YAMC cells. Three replicates were performed for the untransformed YAMC cells, and four replicates were performed for each of the other cell types.

Usage

data(nature2008)

Format

A qPCRset object.

Examples

 data(nature2008)
 show(nature2008)

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning message:
In read.dcf(con) :
  URL 'http://bioconductor.org/BiocInstaller.dcf': status was 'Couldn't resolve host name'
An object of class "qPCRset"
Size:  380 features, 15 samples
Feature types:		  
Feature names:		 0610011I04Rik 1110067D22Rik 1810011O10Rik ...
Feature classes:		  
Feature categories:	 OK, Undetermined 
Sample names:		 YAMC.Poly.A YAMC.Poly.B YAMC.Poly.C ...

nondetects documentation built on Nov. 8, 2020, 5:09 p.m.