oncogene2013: The qPCR data from Sampson _et al._ Oncogene 2013.

In nondetects: Non-detects in qPCR data

Description

Two cell types – young adult mouse colon (YAMC) cells and mutant-p53/activated-Ras transformed YAMC cells – in combination with three treatments – untreated, sodium butyrate, or valproic acid. Four replicates were performed for each cell-type/treatment combination.

Usage

data(oncogene2013)

Format

A qPCRset object.

Examples

 data(oncogene2013)
 show(oncogene2013)

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning message:
In read.dcf(con) :
  URL 'http://bioconductor.org/BiocInstaller.dcf': status was 'Couldn't resolve host name'
An object of class "qPCRset"
Size:  77 features, 24 samples
Feature types:		  
Feature names:		 Plxdc2 Noxa Sfrp2 ...
Feature classes:		  
Feature categories:	 OK, Undetermined 
Sample names:		 Y.UN.2 Y.UN.3 Y.UN.4 ...

nondetects documentation built on Nov. 8, 2020, 5:09 p.m.