samExploreR: samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

This R package is designed for subsampling procedure to simulate sequencing experiments with reduced sequencing depth. This package can be used to anlayze data generated from all major sequencing platforms such as Illumina GA, HiSeq, MiSeq, Roche GS-FLX, ABI SOLiD and LifeTech Ion PGM Proton sequencers. It supports multiple operating systems incluidng Linux, Mac OS X, FreeBSD and Solaris. Was developed with usage of Rsubread.

Package details

AuthorAlexey Stupnikov, Shailesh Tripathi and Frank Emmert-Streib
Bioconductor views Alignment ChIPSeq DNASeq GeneExpression GeneRegulation GeneTarget GeneticVariability GenomeAnnotation ImmunoOncology Preprocessing RNASeq SequenceMatching Sequencing Software WholeGenome
Maintainershailesh tripathi <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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samExploreR documentation built on Nov. 8, 2020, 5:45 p.m.