imageHTS: Analysis of high-throughput microscopy-based screens

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

AuthorGregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber
Date of publicationNone
MaintainerJoseph Barry <joseph.barry@embl.de>
LicenseLGPL-2.1
Version1.24.0

View on Bioconductor

Files in this package

imageHTS/.BBSoptions
imageHTS/CHANGES
imageHTS/DESCRIPTION
imageHTS/NAMESPACE
imageHTS/R
imageHTS/R/cellPicker.R imageHTS/R/classification.R imageHTS/R/configure.R imageHTS/R/extractFeatures-methods.R imageHTS/R/extractFeatures.R imageHTS/R/imageHTS.R imageHTS/R/makeCellHTS.R imageHTS/R/quality.R imageHTS/R/segmentation-segmentATH.R imageHTS/R/segmentation-segmentYeastBF.R imageHTS/R/segmentation.R imageHTS/R/summarize.R imageHTS/R/webQuery.R
imageHTS/TODO
imageHTS/build
imageHTS/build/vignette.rds
imageHTS/inst
imageHTS/inst/NEWS.Rd
imageHTS/inst/cellpicker
imageHTS/inst/cellpicker/cellpicker.html
imageHTS/inst/cellpicker/css
imageHTS/inst/cellpicker/css/cellpicker.css
imageHTS/inst/cellpicker/css/ie.css
imageHTS/inst/cellpicker/javascript
imageHTS/inst/cellpicker/javascript/cellpicker_functions.js
imageHTS/inst/cellpicker/javascript/next_image.js
imageHTS/inst/cellpicker/javascript/var_ini.js
imageHTS/inst/cellpicker/javascript/wz_jsgraphics.js
imageHTS/inst/cellpicker/javascript/wz_tooltip.js
imageHTS/inst/doc
imageHTS/inst/doc/imageHTS-introduction.R
imageHTS/inst/doc/imageHTS-introduction.Rnw
imageHTS/inst/doc/imageHTS-introduction.pdf
imageHTS/inst/submorph
imageHTS/inst/submorph/conf
imageHTS/inst/submorph/conf/annotation.txt
imageHTS/inst/submorph/conf/description.txt
imageHTS/inst/submorph/conf/featurepar.txt
imageHTS/inst/submorph/conf/imageconf.txt
imageHTS/inst/submorph/conf/plateconf.txt
imageHTS/inst/submorph/conf/screenlog.txt
imageHTS/inst/submorph/conf/segmentationpar.txt
imageHTS/inst/submorph/conf/trainingset.txt
imageHTS/inst/submorph/data
imageHTS/inst/submorph/data/classifier.rda
imageHTS/inst/submorph/data/profiles.tab
imageHTS/inst/submorph/source
imageHTS/inst/submorph/source/PK-10B-pl1
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A003
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A003/FITC.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A005
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A005/FITC.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A005/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-A005/Tritc.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B003
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B003/FITC.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B005
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B005/FITC.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B005/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-B005/Tritc.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-C003
imageHTS/inst/submorph/source/PK-10B-pl1/Well-C003/FITC.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-C003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-C003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-D003
imageHTS/inst/submorph/source/PK-10B-pl1/Well-D003/FITC.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-D003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-10B-pl1/Well-D003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A003
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A003/FITC.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A005
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A005/FITC.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A005/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-A005/Tritc.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B003
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B003/FITC.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B005
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B005/FITC.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B005/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-B005/Tritc.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-C003
imageHTS/inst/submorph/source/PK-11B-pl1/Well-C003/FITC.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-C003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-C003/Tritc.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-D003
imageHTS/inst/submorph/source/PK-11B-pl1/Well-D003/FITC.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-D003/Hoechst.jpeg
imageHTS/inst/submorph/source/PK-11B-pl1/Well-D003/Tritc.jpeg
imageHTS/inst/submorph/submorph.R
imageHTS/inst/webquery
imageHTS/inst/webquery/index.php
imageHTS/inst/yeast.jpeg
imageHTS/man
imageHTS/man/collectCellFeatures.Rd imageHTS/man/countObjects.Rd imageHTS/man/extractFeatures.Rd imageHTS/man/fileHTS.Rd imageHTS/man/getImageConf.Rd imageHTS/man/getUnames.Rd imageHTS/man/getWellFeatures.Rd imageHTS/man/highlightSegmentation.Rd imageHTS/man/imageHTS.Rd imageHTS/man/installCellPicker.Rd imageHTS/man/makeCellHTS.Rd imageHTS/man/parseDCF.Rd imageHTS/man/parseImageConf.Rd imageHTS/man/popCellPicker.Rd imageHTS/man/prw2uname.Rd imageHTS/man/readLearnTS.Rd imageHTS/man/segmentATH.Rd imageHTS/man/segmentWells.Rd imageHTS/man/segmentYeastBF.Rd imageHTS/man/summarizeWells.Rd imageHTS/man/zprime.Rd
imageHTS/vignettes
imageHTS/vignettes/cellpicker.jpeg
imageHTS/vignettes/imageHTS-introduction.Rnw
imageHTS/vignettes/imageHTS.bib
imageHTS/vignettes/webquery.jpeg

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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