collectCellFeatures: Collect cell features.
In imageHTS: Analysis of high-throughput microscopy-based screens
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Collect cell features from a given set of cells.
Usage
1
collectCellFeatures(x, uname, spot=NULL, id=NULL, access='cache')
Arguments
x
An imageHTS object.
uname
a character vector, containing the well names from where to
collect the cell features. See getUnames for details.
spot
An optional numeric vector indicating the spots from where to
collect the cell features. If missing, all spots are considered. The
length of the vector must be the same as uname.
id
An optional numeric vector indicating the cell ids. If
missing, all cells are considered. The length of the vector must be
the same as uname.
access
A character string indicating how to access the
data. Valid values are local, server and cache,
the default. See fileHTS for details.
Details
Contrary to readHTS, collectCellFeatures collects cell
features through multiple wells. Output data frame contains the columns
uname, spot and id.
Value
A data frame containing the cell features.
Author(s)
Gregoire Pau, gregoire.pau@embl.de, 2010
See Also
Examples
1
2
## see extractFeatures for an example of collectCellFeatures
## example(extractFeatures)
imageHTS documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Collect cell features from a given set of cells.
Usage
1 | collectCellFeatures(x, uname, spot=NULL, id=NULL, access='cache')
|
Arguments
x |
An imageHTS object. |
uname |
a character vector, containing the well names from where to
collect the cell features. See |
spot |
An optional numeric vector indicating the spots from where to
collect the cell features. If missing, all spots are considered. The
length of the vector must be the same as |
id |
An optional numeric vector indicating the cell ids. If
missing, all cells are considered. The length of the vector must be
the same as |
access |
A character string indicating how to access the
data. Valid values are |
Details
Contrary to readHTS, collectCellFeatures collects cell
features through multiple wells. Output data frame contains the columns
uname, spot and id.
Value
A data frame containing the cell features.
Author(s)
Gregoire Pau, gregoire.pau@embl.de, 2010
See Also
Examples
1 2 | ## see extractFeatures for an example of collectCellFeatures
## example(extractFeatures)
|
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