popCellPicker: Pop up imageHTS web modules
In imageHTS: Analysis of high-throughput microscopy-based screens

Description Usage Arguments Details Value Author(s) See Also Examples

Pop up the imageHTS web modules cellPicker and webQuery, using the web browser.

1 2	popCellPicker(x, uname, spot, id.highlight, access='server', browse=TRUE) popWebQuery(x, access='server', browse=TRUE)

`x`	An imageHTS object.
`uname`	A character vector, containing the well names to annotate. See `getUnames` for details.
`spot`	An optional numeric vector, containing the spot indexes of the wells to annotate. If missing, only the first spot is used.
`id.highlight`	An optional numeric vector, containing the object indexes to highlight. If missing, no object is highlighted.
`access`	A character string indicating how to access the data. Valid values are `local`, `cache` and `server`, the default. See `fileHTS` for details.
`browse`	A logical indicating whether the web browser should be loaded. Default is `TRUE`.

cellPicker must be installed using installCellPicker before using popCellPicker on the local project directory. If present, the numeric vector spot must have the same length as uname.

webQuery must be installed using installWebQuery before using popWebQuery on the local project directory.

A character string containing the URL to access the cellPicker or the webQuery web module.

Gregoire Pau, gregoire.pau@embl.de, 2010

installCellPicker, installWebQuery, getUnames

## initialize imageHTS object using the remote kimorph screen
local = tempdir()
server = 'http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph/'
x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server)

if (interactive()) {
  popCellPicker(x, uname=c('002-02-A11', '001-01-C17'))
  popWebQuery(x)
}