easyRNASeq: Count summarization and normalization for RNA-Seq data

Calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq' or 'edgeR' package.

Package details

AuthorNicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Bioconductor views GeneExpression Genetics ImmunoOncology Preprocessing RNASeq
MaintainerNicolas Delhomme <nicolas.delhomme@umu.se>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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easyRNASeq documentation built on April 30, 2020, 2 a.m.