Files in easyRNASeq
Count summarization and normalization for RNA-Seq data

DESCRIPTION
NAMESPACE
NEWS
R
R/AllClasses.R R/AllGenerics.R R/DESeq-methods.R R/GenomicRanges-methods.R R/IRanges-methods.R R/Rsamtools-methods.R R/ShortRead-methods.R R/basename-methods.R R/easyRNASeq-AnnotParam-accessors.R R/easyRNASeq-AnnotParam.R R/easyRNASeq-BamFileList.R R/easyRNASeq-BamParam-accessors.R R/easyRNASeq-BamParam.R R/easyRNASeq-RnaSeqParam-accessors.R R/easyRNASeq-RnaSeqParam.R R/easyRNASeq-accessors.R R/easyRNASeq-annotation.R R/easyRNASeq-counts.R R/easyRNASeq-coverage-methods.R R/easyRNASeq-internal-AnnotParam-methods.R R/easyRNASeq-internal-annotation.R R/easyRNASeq-internal-counts.R R/easyRNASeq-internal-methods.R R/easyRNASeq-internal-normalize.R R/easyRNASeq-islands.R R/easyRNASeq-methods.R R/easyRNASeq-normalize.R R/easyRNASeq-package.R R/easyRNASeq-simpleRNASeq.R R/easyRNASeq-synthetic-transcripts.R R/edgeR-methods.R R/file.exists-methods.R R/genomeIntervals-methods.R R/parallel-methods.R R/print-methods.R R/show-methods.R
build
build/vignette.rds
data
data/RobinsonDelhomme2014.txt.gz
inst
inst/CITATION
inst/doc
inst/doc/easyRNASeq.R
inst/doc/easyRNASeq.Rnw
inst/doc/easyRNASeq.pdf inst/doc/simpleRNASeq.R inst/doc/simpleRNASeq.Rmd
inst/doc/simpleRNASeq.html
inst/unitTests
inst/unitTests/test_accessors.R inst/unitTests/test_annotations.R inst/unitTests/test_classes.R inst/unitTests/test_extensions.R inst/unitTests/test_methods.R inst/unitTests/test_print.R inst/unitTests/test_ranges.R inst/unitTests/test_variables.R
man
man/DESeq-methods.Rd man/GenomicRanges-methods.Rd man/IRanges-methods.Rd man/Rsamtools-methods.Rd man/ShortRead-methods.Rd man/basename-methods.Rd man/easyRNASeq-AnnotParam-accessors.Rd man/easyRNASeq-AnnotParam-class.Rd man/easyRNASeq-AnnotParam.Rd man/easyRNASeq-BamFileList.Rd man/easyRNASeq-BamParam-accessors.Rd man/easyRNASeq-BamParam-class.Rd man/easyRNASeq-BamParam.Rd man/easyRNASeq-RnaSeqParam-accessors.Rd man/easyRNASeq-RnaSeqParam-class.Rd man/easyRNASeq-RnaSeqParam.Rd man/easyRNASeq-accessors.Rd man/easyRNASeq-annotation-internal-methods.Rd man/easyRNASeq-annotation-methods.Rd man/easyRNASeq-class.Rd man/easyRNASeq-correction-methods.Rd man/easyRNASeq-coverage-methods.Rd man/easyRNASeq-datasets.Rd man/easyRNASeq-defunct-annotation-methods.Rd man/easyRNASeq-defunct.Rd man/easyRNASeq-deprecated.Rd man/easyRNASeq-easyRNASeq.Rd man/easyRNASeq-global-variables.Rd man/easyRNASeq-internal-AnnotParam-methods.Rd man/easyRNASeq-internal-methods.Rd man/easyRNASeq-island-methods.Rd man/easyRNASeq-package.Rd man/easyRNASeq-simpleRNASeq.Rd man/easyRNASeq-summarization-internal-methods.Rd man/easyRNASeq-summarization-methods.Rd man/easyRNASeq-synthetic-transcripts.Rd man/edgeR-methods.Rd man/file.exists-methods.Rd man/genomeIntervals-methods.Rd man/parallel-methods.Rd man/print-methods.Rd man/show-methods.Rd
tests
tests/runTests.R
vignettes
vignettes/Bibliography
vignettes/Bibliography/References.bib
vignettes/easyRNASeq.Rnw
vignettes/easyRNASeq.png
vignettes/simpleRNASeq.Rmd
easyRNASeq documentation built on July 15, 2017, 2 a.m.