easyRNASeq-RnaSeqParam-accessors: Accessors for RnaSeqParam class

In easyRNASeq: Count summarization and normalization for RNA-Seq data

Description

These functions and generics define 'accessors' (to get and set values) for RnaSeqParam objects within the easyRNASeq package. Implemented are:

• annotParam

• bamParam

• countBy

• datasource

• paired

• precision

• stranded

• strandProtocol

• yieldSize

Usage

## S4 method for signature 'RnaSeqParam'
yieldSize(object)

Arguments

object

An object derived from class RnaSeqParam.

Value

The value of the corresponding slot.

Author(s)

Nicolas Delhomme

See Also

• The AnnotParam class

• The BamParam class

• The RnaSeqParam class

The BamParam yieldSize accessor

Examples

## create the necessary AnnotParam
annotParam <- AnnotParam(
                datasource=system.file(
                                "extdata",
                                "Dmel-mRNA-exon-r5.52.gff3",
                                package="RnaSeqTutorial"))

## create the RnaSeqParam
rsp <- RnaSeqParam(annotParam=annotParam)
## get the yieldSize Parameter
ysize <-yieldSize(rsp)

easyRNASeq documentation built on April 30, 2020, 2 a.m.