easyRNASeq-global-variables: Objects created when the package is attached.

In easyRNASeq: Count summarization and normalization for RNA-Seq data

Description

The package creates the following objects when attached

• GTF.FIELDS

• ANNOTATION.TYPE

• TUTORIAL.DATA

• VIGNETTE.DATA

Arguments

libname	a character string giving the library directory where the package defining the namespace was found.
pkgname	a character string giving the name of the package.

Details

These objects hold the following information

• GTF.FIELDS c("gene_id","transcript_id","exon_id","gene_name")

• ANNOTATION.TYPE c(mRNA="mRNA",exon="exon")

• TUTORIAL.DATA: The list of files needed for the help and test pages

• VIGNETTE.DATA: The list of files needed for the vignette

and are designed as global variables to expose the fact that they are hardcoded. These exist as placeholder in case a user would require different values for these.

See Also

.onAttach in the base package.

easyRNASeq documentation built on April 30, 2020, 2 a.m.