easyRNASeq-defunct: The following function are defunct: • 'easyRNASeq' •...

In easyRNASeq: Count summarization and normalization for RNA-Seq data

Description

• The plotDispersionEstimates,DGEList-method function is superseded by the plotBCV function as the edgeR DGEList object structure changed

• The easyRNASeq function is superseded by the simpleRNASeq function to consolidate and prune the overall package. The changes are based on user comments and on the general standardization occuring in the field.

• The fetchCoverage function only had two parameters deprecated as the consequence of the package consolidation. As the scanBam function is not called directly anymore but through higher level functions (from the GenomicRanges package), the 'what' and 'isUnmappedQuery' parameters were obsolete.

easyRNASeq documentation built on April 30, 2020, 2 a.m.