Anaquin: Statistical analysis of sequins

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Anaquin")
AuthorTed Wong
Bioconductor views DifferentialExpression GeneExpression Preprocessing RNASeq Software
Date of publicationNone
MaintainerTed Wong <t.wong@garvan.org.au>
LicenseBSD_3_clause + file LICENSE
Version1.0.0
www.sequin.xyz

View on Bioconductor

Functions

analysis Man page
analysis,AnaquinData-method Man page
AnaquinData Man page
input Man page
input,AnaquinData-method Man page
label Man page
label,AnaquinData-method Man page
measured Man page
measured,AnaquinData-method Man page
mixtureA Man page
mixtureB Man page
mixtureF Man page
plotLinear Man page
plotLODR Man page
plotLogistic Man page
plotROC Man page
pval Man page
pval,AnaquinData-method Man page
qval Man page
qval,AnaquinData-method Man page
ratio Man page
ratio,AnaquinData-method Man page
RnaQuin.gen2iso Man page
RnaQuin.gen2iso,AnaquinData-method Man page
RnaQuin.genes Man page
RnaQuin.genes,AnaquinData-method Man page
RnaQuin.isoforms Man page
RnaQuin.isoforms,AnaquinData-method Man page
score Man page
score,AnaquinData-method Man page
seqs Man page
seqs,AnaquinData-method Man page
std Man page
std,AnaquinData-method Man page
UserGuideData_5.4.5.1 Man page
UserGuideData_5.4.6.3 Man page
UserGuideData_5.6.3 Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.