Differential expression (RnaQuin)

Description

Differential gene expression estimated by DESeq2. Section 5.6.3 has details on the data set.

Usage

1

Format

Data frame:

  • ExpLFC: Expected log-fold change

  • ObsLFC: Observed log-fold change

  • SD: Standard deviation of the measurment

  • Pval: P-value probability

  • Qval: Q-value probability

  • Mean: Average counts across the samples

  • Label: Average counts across the samples

Value

Data frame with columns defined in Format.

Source

S.A Hardwick. Spliced synthetic genes as internal controls in RNA sequencing experiments. Nature Methods, 2016.