quantro: A test for when to use quantile normalization

A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.

Package details

AuthorStephanie Hicks [aut, cre] (<https://orcid.org/0000-0002-7858-0231>), Rafael Irizarry [aut] (<https://orcid.org/0000-0002-3944-4309>)
Bioconductor views Microarray MultipleComparison Normalization Preprocessing Sequencing
MaintainerStephanie Hicks <shicks19@jhu.edu>
LicenseGPL (>=3)
Version1.22.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("quantro")

Try the quantro package in your browser

Any scripts or data that you put into this service are public.

quantro documentation built on April 29, 2020, 4:21 a.m.