quantro: A test for when to use quantile normalization

A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.

AuthorStephanie Hicks and Rafael Irizarry
Date of publicationNone
MaintainerStephanie Hicks <shicks@jimmy.harvard.edu>
LicenseGPL (>=3)
Version1.8.0

View on Bioconductor

Files

quantro/DESCRIPTION
quantro/NAMESPACE
quantro/R
quantro/R/AllClasses.R quantro/R/AllGenerics.R quantro/R/flowSorted.R quantro/R/methods.R quantro/R/plots.R
quantro/README.md
quantro/build
quantro/build/vignette.rds
quantro/data
quantro/data/datalist
quantro/data/flowSorted.RData
quantro/figure
quantro/figure/plot-distributions-boxplot.pdf
quantro/figure/plot-distributions-density.pdf
quantro/figure/quantro-plot.pdf
quantro/inst
quantro/inst/NEWS
quantro/inst/doc
quantro/inst/doc/quantro-vignette.R
quantro/inst/doc/quantro-vignette.Rnw
quantro/inst/doc/quantro-vignette.pdf
quantro/inst/objectCreation.R
quantro/inst/unitTests
quantro/inst/unitTests/test_quantro.R
quantro/man
quantro/man/MSbetween.Rd quantro/man/MSwithin.Rd quantro/man/anova.Rd quantro/man/flowSorted.Rd quantro/man/matboxplot.Rd quantro/man/matdensity.Rd quantro/man/quantro-class.Rd quantro/man/quantro.Rd quantro/man/quantroPlot.Rd quantro/man/quantroPvalPerm.Rd quantro/man/quantroStat.Rd quantro/man/quantroStatPerm.Rd quantro/man/summary.Rd
quantro/tests
quantro/tests/runTests.R
quantro/vignettes
quantro/vignettes/figure
quantro/vignettes/figure/plot-distributions-boxplot-1.pdf
quantro/vignettes/figure/plot-distributions-density-1.pdf
quantro/vignettes/figure/quantro-plot-1.pdf
quantro/vignettes/library.bib
quantro/vignettes/quantro-vignette-concordance.tex
quantro/vignettes/quantro-vignette.Rnw

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