shinyMethyl: Interactive visualization for Illumina methylation arrays

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

AuthorJean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Date of publicationNone
MaintainerJean-Philippe Fortin <jfortin@jhsph.edu>
LicenseArtistic-2.0
Version1.10.0
https://github.com/Jfortin1/shinyMethyl

View on Bioconductor

Functions

combine Man page
combine,shinyMethylSet,shinyMethylSet-method Man page
getBeta Man page
getBeta,shinyMethylSet-method Man page
getCN Man page
getCN,shinyMethylSet-method Man page
getGreenControls Man page
getM Man page
getMeth Man page
getMeth,shinyMethylSet-method Man page
getM,shinyMethylSet-method Man page
getPCA Man page
getRedControls Man page
getUnmeth Man page
getUnmeth,shinyMethylSet-method Man page
orderByName Man page
pData Man page
pData,shinyMethylSet-method Man page
runShinyMethyl Man page
sampleNames Man page
sampleNames,shinyMethylSet-method Man page
shinyMethyl Man page
shinyMethyl-package Man page
shinyMethylSet Man page
shinyMethylSet-class Man page
shinySummarize Man page
shinySummarize,GenomicRatioSet-method Man page
shinySummarize-methods Man page
shinySummarize,RGChannelSet-method Man page
show,shinyMethylSet-method Man page

Files

shinyMethyl/.travis.yml
shinyMethyl/DESCRIPTION
shinyMethyl/NAMESPACE
shinyMethyl/R
shinyMethyl/R/plotControlProbes.R shinyMethyl/R/plotDensities.R shinyMethyl/R/plotDesign.R shinyMethyl/R/plotPCA.R shinyMethyl/R/plotQC.R shinyMethyl/R/plotSex.R shinyMethyl/R/runShinyMethyl.R shinyMethyl/R/server.R shinyMethyl/R/shinyMethylSet.R shinyMethyl/R/shinySummarize.R shinyMethyl/R/ui.R
shinyMethyl/README.md
shinyMethyl/build
shinyMethyl/build/vignette.rds
shinyMethyl/inst
shinyMethyl/inst/CITATION
shinyMethyl/inst/NEWS.Rd
shinyMethyl/inst/doc
shinyMethyl/inst/doc/shinyMethyl.R
shinyMethyl/inst/doc/shinyMethyl.Rnw
shinyMethyl/inst/doc/shinyMethyl.pdf
shinyMethyl/inst/testData
shinyMethyl/inst/testData/testData.R
shinyMethyl/inst/unitTests
shinyMethyl/inst/unitTests/testDigests.rda
shinyMethyl/inst/unitTests/test_shinySummarize.R
shinyMethyl/man
shinyMethyl/man/runShinyMethyl.Rd shinyMethyl/man/shinyMethyl-package.Rd shinyMethyl/man/shinyMethylSet-class.Rd shinyMethyl/man/shinySummarize-methods.Rd
shinyMethyl/tests
shinyMethyl/tests/runTests.R
shinyMethyl/vignettes
shinyMethyl/vignettes/figures
shinyMethyl/vignettes/figures/All.png
shinyMethyl/vignettes/figures/BothPlate.pdf
shinyMethyl/vignettes/figures/BothStatus.pdf
shinyMethyl/vignettes/screenshot_design.png
shinyMethyl/vignettes/screenshot_designbias.png
shinyMethyl/vignettes/screenshot_pca.png
shinyMethyl/vignettes/screenshot_qc.png
shinyMethyl/vignettes/screenshot_sexprediction.png
shinyMethyl/vignettes/shinyMethyl.Rnw
shinyMethyl/vignettes/shinyMethyl.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.