shinySummarize-methods: Summarizing a large 450K experiment into a shinyMethylSet
In shinyMethyl: Interactive visualization for Illumina methylation arrays
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
Summarizing methylation data from a RGChannelSet or GenomicRatioSet into a shinyMethylSet needed to launch the interactive interface of shinyMethyl. That works for both the 450k and EPIC arrays.
Usage
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## S4 method for signature 'RGChannelSet'
shinySummarize(object)
## S4 method for signature 'GenomicRatioSet'
shinySummarize(object)
Arguments
object
Either a RGChannelSet or a
GenomicRatioSet.
Details
Either a RGChannelSet is transformed into a shinyMethylSet, or a GenomicRatioSet is transformed to a shinyMethylSet
Author(s)
Jean-Philippe Fortin jfortin@jhsph.edu
See Also
shinyMethylSet for the output object and
RGChannelSet or GenomicRatioSet for the input object.
Examples
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if (require(minfiData)){
library(minfiData)
summarized.data <- shinySummarize(RGsetEx)
}
shinyMethyl documentation built on Nov. 8, 2020, 4:51 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
Description
Summarizing methylation data from a RGChannelSet or GenomicRatioSet into a shinyMethylSet needed to launch the interactive interface of shinyMethyl. That works for both the 450k and EPIC arrays.
Usage
1 2 3 4 | ## S4 method for signature 'RGChannelSet'
shinySummarize(object)
## S4 method for signature 'GenomicRatioSet'
shinySummarize(object)
|
Arguments
object |
Either a |
Details
Either a RGChannelSet is transformed into a shinyMethylSet, or a GenomicRatioSet is transformed to a shinyMethylSet
Author(s)
Jean-Philippe Fortin jfortin@jhsph.edu
See Also
shinyMethylSet for the output object and
RGChannelSet or GenomicRatioSet for the input object.
Examples
1 2 3 4 | if (require(minfiData)){
library(minfiData)
summarized.data <- shinySummarize(RGsetEx)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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