shinySummarize-methods: Summarizing a large 450K experiment into a shinyMethylSet

Description Usage Arguments Details Author(s) See Also Examples

Description

Summarizing methylation data from a RGChannelSet or GenomicRatioSet into a shinyMethylSet needed to launch the interactive interface of shinyMethyl. That works for both the 450k and EPIC arrays.

Usage

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## S4 method for signature 'RGChannelSet'
shinySummarize(object)
## S4 method for signature 'GenomicRatioSet'
shinySummarize(object)

Arguments

object

Either a RGChannelSet or a GenomicRatioSet.

Details

Either a RGChannelSet is transformed into a shinyMethylSet, or a GenomicRatioSet is transformed to a shinyMethylSet

Author(s)

Jean-Philippe Fortin jfortin@jhsph.edu

See Also

shinyMethylSet for the output object and RGChannelSet or GenomicRatioSet for the input object.

Examples

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if (require(minfiData)){
  library(minfiData)
  summarized.data <- shinySummarize(RGsetEx)
}

shinyMethyl documentation built on April 29, 2020, 5:28 a.m.