runShinyMethyl: Run the interactive shinyMethyl session

Description Usage Arguments Value Author(s) See Also Examples

View source: R/runShinyMethyl.R

Description

Function to run the interactive shinyMethyl session from a shinyMethylSet.

Usage

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runShinyMethyl(shinyMethylSet1, shinyMethylSet2 = NULL)

Arguments

shinyMethylSet1

shinyMethylSet that must be extracted from an RGChannelSet

shinyMethylSet2

optional shinyMethylSet that must be extracted from an GenomicRatioSet

Value

No value returned. Instead the shinyMethyl interactive session is launched.

Author(s)

Jean-Philippe Fortin

See Also

shinyMethylSet

Examples

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## Not run: 
if (require(minfiData)){
  baseDir <- system.file("extdata", package = "minfiData")
  targets <- read.450k.sheet(baseDir)
  targets$Sample_Plate <- substr(targets$Slide,1,7)
  RGSet <- read.450k.exp(base = baseDir, targets = targets)

  summarized.data <- shinySummarize(RGSet)
  runShinyMethyl(summarized.data)
}

## End(Not run)

shinyMethyl documentation built on April 29, 2020, 5:28 a.m.