TSSi: Transcription Start Site Identification

Identify and normalize transcription start sites in high-throughput sequencing data.

Author
Julian Gehring, Clemens Kreutz
Date of publication
None
Maintainer
Julian Gehring <jg-bioc@gmx.com>
License
GPL-3
Version
1.20.0

View on Bioconductor

Man pages

asRangedData-methods
Convert to 'RangedData'
get-methods
Get methods
identify-methods
Identify methods
normalize-methods
Normalize methods
physcoCounts-data
CAP capture data
plot-methods
Plot methods
segmentize-methods
Segmentize methods
subtract-functions
Subtract functions
TssData-class
Class 'TssData'
TSSi-package
Transcription Start Site Identification
TssNorm-class
Class 'TssNorm'
TssResult-class
Class 'TssResult'

Files in this package

TSSi/DESCRIPTION
TSSi/NAMESPACE
TSSi/R
TSSi/R/TssData-class.R
TSSi/R/TssNorm-class.R
TSSi/R/TssResult-class.R
TSSi/R/asRangedData-methods.R
TSSi/R/assess-functions.R
TSSi/R/get-methods.R
TSSi/R/identify-functions.R
TSSi/R/identify-methods.R
TSSi/R/internal-functions.R
TSSi/R/normalize-functions.R
TSSi/R/normalize-methods.R
TSSi/R/plot-functions.R
TSSi/R/plot-methods.R
TSSi/R/segmentize-functions.R
TSSi/R/segmentize-methods.R
TSSi/R/show-functions.R
TSSi/R/show-methods.R
TSSi/R/subtract-functions.R
TSSi/build
TSSi/build/vignette.rds
TSSi/data
TSSi/data/physcoCounts.RData
TSSi/inst
TSSi/inst/doc
TSSi/inst/doc/TSSi.R
TSSi/inst/doc/TSSi.Rnw
TSSi/inst/doc/TSSi.pdf
TSSi/man
TSSi/man/TSSi-package.Rd
TSSi/man/TssData-class.Rd
TSSi/man/TssNorm-class.Rd
TSSi/man/TssResult-class.Rd
TSSi/man/asRangedData-methods.Rd
TSSi/man/get-methods.Rd
TSSi/man/identify-methods.Rd
TSSi/man/normalize-methods.Rd
TSSi/man/physcoCounts-data.Rd
TSSi/man/plot-methods.Rd
TSSi/man/segmentize-methods.Rd
TSSi/man/subtract-functions.Rd
TSSi/src
TSSi/src/assess.c
TSSi/src/assess.h
TSSi/src/init.c
TSSi/vignettes
TSSi/vignettes/TSSi.Rnw
TSSi/vignettes/TSSi.lyx