TssNorm-class: Class 'TssNorm'

In TSSi: Transcription Start Site Identification

Description

Class TssNorm storing normalized sequence read data.

Slots

reads:

List with the read data for each segment.

segments:

Data frame with the information of the individual segments.

annotation:

Annotation data object, as passed through the annotation argument.

Methods

All methods for class TssData, as well as:

identifyStartSites methods:

identifyStartSites:

signature(x="TssNorm")

Identify TSS in the normalized data.

get methods:

ratio:

signature(x="TssNorm")

Get the normalized reads based on the Poisson ratios, seestart.

fit:

signature(x="TssNorm")

Get the normalized reads based on the fit, seestart.

[:

signature(x="TssNorm")

Subset the object, by name or index.

Author(s)

Maintainer: Julian Gehring <[e-mail]>

See Also

Classes: TssData, TssNorm, TssResult

Methods: segmentizeCounts, normalizeCounts, identifyStartSites, get-methods, plot-methods, asRangedData-methods

Functions: subtract-functions

Data set: physcoCounts

Package: TSSi-package

Examples

showClass("TssNorm")

TSSi documentation built on May 6, 2019, 2:40 a.m.