asRangedData-methods: Convert to 'RangedData'

In TSSi: Transcription Start Site Identification

Description

Convert data and results to objects of class RangedData.

Usage

readsAsRangedData(x)

segmentsAsRangedData(x)

tssAsRangedData(x)

Arguments

x	Object of class TssData or inherited; for tssAsRangedData an object of class TssResult.

Details

The RangedData class provides a widely used framework for representing sequence information. Converting the data to an object of this class allows an easy interaction with other packages and export to common formats, using for example the rtracklayer package. For an example, please see the vignette of this package.

Value

An object of class RangedData

Methods

readsAsRangedData:

signature(x="TssData")

Convert the reads, as obtained by the reads method, to an object of class RangedData.

segmentsAsRangedData:

signature(x="TssData")

Convert the segments, as obtained by the segments method, to an object of class RangedData.

tssAsRangedData:

signature(x="TssResult")

Convert the TSS predictions, as obtained by the tss method, to an object of class RangedData.

Author(s)

Maintainer: Julian Gehring <[e-mail]>

See Also

RangedData

Classes: TssData, TssNorm, TssResult

Methods: segmentizeCounts, normalizeCounts, identifyStartSites, get-methods, plot-methods, asRangedData-methods

Functions: subtract-functions

Data set: physcoCounts

Package: TSSi-package

Examples

example(segmentizeCounts)

readsRd <- readsAsRangedData(x)

segmentsRd <- segmentsAsRangedData(x)

TSSi documentation built on May 6, 2019, 2:40 a.m.