cellHTS2: Analysis of cell-based screens - revised version of cellHTS

This package provides tools for the analysis of high-throughput assays that were performed in microtitre plate formats (including but not limited to 384-well plates). The functionality includes data import and management, normalisation, quality assessment, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work, we have applied the package to RNAi screens on fly and human cells, and for screens of yeast libraries. See ?cellHTS2 for a brief introduction.

Package details

AuthorLigia Bras, Wolfgang Huber <whuber@embl.de>, Michael Boutros <m.boutros@dkfz.de>, Gregoire Pau <gpau@embl.de>, Florian Hahne <florian.hahne@novartis.com>
Bioconductor views CellBasedAssays ImmunoOncology Preprocessing Visualization
MaintainerJoseph Barry <joseph.barry@embl.de>
URL http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the cellHTS2 package in your browser

Any scripts or data that you put into this service are public.

cellHTS2 documentation built on April 29, 2020, 2:50 a.m.