convertOldCellHTS: Convert an old S3 class cellHTS object to the new S4 class...

In cellHTS2: Analysis of cell-based screens - revised version of cellHTS

Description

Convert an old S3 cellHTS object (from the cellHTS package) into one or several S4 cellHTS objects (from the cellHTS2 package).

Usage

convertOldCellHTS(oldObject)

Arguments

oldObject

an S3 class cellHTS object obtained using the package cellHTS.

Value

The function returns a list containing one or more cellHTS objects. The element raw contains the unnormalized data from oldObject. Depending on the state of oldObject (on whether it is normalized and scored), the other components of this list can be: normalized, an S4 cellHTS object containing the normalized data, and scored, an S4 class cellHTS object containing the scored data.

Author(s)

Ligia P. Bras [e-mail]

References

Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.

See Also

updateCellHTS

Examples

    data("oldKcViabSmall")
    out <-  convertOldCellHTS(oldKcViabSmall)
    names(out)
    out[["raw"]]

cellHTS2 documentation built on Nov. 8, 2020, 6 p.m.