getEnVisionRawData: Read a plate file obtain from EnVision Plate Reader
In cellHTS2: Analysis of cell-based screens - revised version of cellHTS

Description Usage Arguments Details Value Author(s) See Also Examples

Import functions to read a plate file obtained from EnVision Plate Reader. These functions should be set as the import function of readPlateList through the argument importFun when reading plate result files obtained from EnVision plate reader.

1 2	getEnVisionRawData(f, p) getEnVisionCrosstalkCorrectedData(f, p)

`f`	the name of the result plate file to read.
`p`	capturing the additional path argument, which will actually be ignored. `f` is expected to be a fully resolved file path.

These functions should not be called directly. Instead, they should be set as the import function of readPlateList through the argument importFun when reading plate result files obtained from an EnVision plate reader.

These functions return a list with two components. The first component should be a 'data.frame' with the following slots: well (a character vector with the well identifier in the plate) and val (the intensity values measured at each well). The second component of this list should be a character vector containing a copy of the imported input data file (such as the output of readLines). It should be suitable to be used as input for writeLines.

Ligia Bras ligia@ebi.ac.uk

readPlateList

    plateFile <- system.file("EnVisionExample/XXX_1500.csv", package = "cellHTS2")
    onePlate <- getEnVisionRawData(plateFile)

   ## to get the cross talk corrected data:
   onePlate2 <- getEnVisionCrosstalkCorrectedData(plateFile)