wellAnno: Access the annotation from a cellHTS object.

Description Usage Arguments Value Author(s) References See Also

Description

These generic functions access the annotation data stored in the featureData slot of an object of class cellHTS.

Usage

1
2
wellAnno(object)
geneAnno(object)

Arguments

object

Object derived from class cellHTS.

Value

wellAnno returns a factor of length equal to the total number of features (number of plates x number of wells per plate) indicating the contents of the wells. Corresponds to fData(object)[,"controlStatus"].

geneAnno returns a vector of the same length as the number of features in object (number of plates x number of wells per plate) containing the gene IDs used in the screen. This corresponds to the contents of fData(object)[,"GeneID"].

See cellHTS class for details.

Author(s)

Ligia Bras [email protected]

References

Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.

See Also

cellHTS


cellHTS2 documentation built on Nov. 17, 2017, 1:30 p.m.