intensityFiles: Retrieve the contents of the input files used to generate a...
In cellHTS2: Analysis of cell-based screens - revised version of cellHTS

Description Usage Arguments Value Author(s) See Also

These generic functions access different slots of an object derived from the cellHTS class, which contain the original content of the input files used to create the object.

intensityFiles(object)
plateList(object)
plateConf(object)
screenLog(object)
screenDesc(object)

object

an object of class cellHTS.

intensityFiles returns a list, where each component contains a copy of the imported input data files.

plateList returns a data.frame containing what was read from the plate list file, plus a column status of type character that contains the string "OK" if the data import appeared to have gone well, and the respective error or warning message otherwise. See readPlateList for more details.

plateConf returns a data.frame that contains what was read from the plate configuration input file (except the first two header rows) during the screen configuration step. For more details see configure.

screenLog returns a data.frame containing what was read from the screen log input file during the screen configuration step. See configure for more details.

screenDesc returns an object of class character that contains what was read from the screen description input file during the configuration of the cellHTS object. See configure for more details.

Ligia Bras ligia@ebi.ac.uk

cellHTS, readPlateList, configure, name

cellHTS2 documentation built on Nov. 8, 2020, 6 p.m.