This generic function accesses plate effects stored in slot
Object derived from class
plateEffects returns a list with two elements:
plateEffects[["rowcol"]] corresponds to the contents of slot
object. This is a 3D array with the same dimensions as
nr of Features x nr of Samples x nr of Channels of the current
plateEffects[["overall"]] contains the data stored in slot
object. This is a 3D array with dimensions
nr Plates x nr Samples x nr Channels of
overall.effects is only estimated when B score method is used to normalize the data.
Note that these 2 slots accessed by this function were stored after preprocessing the data either using Bscore method or local regression fit (see
normalizePlates for details), by setting the option
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