crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

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crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.

Getting started

Package overview Copy number estimation crlmm Vignette - Downstream Analysis crlmm Vignette - Genotyping crlmm Vignette - Illumina 370k chip From Genotypes to Association IlluminaPreprocessCN Vignette for Illumina Infrastructure for copy number analysis Infrastructure for copy number analysis Overview of copy number vignettes Preprocessing and genotyping Illumina arrays for copy number analysis

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Package details
AuthorBenilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
Bioconductor views CopyNumberVariation Microarray Preprocessing SNP
MaintainerBenilton S Carvalho <benilton@unicamp.br>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
LicenseArtistic-2.0
Version1.48.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crlmm")

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crlmm documentation built on Nov. 8, 2020, 4:55 p.m.

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