constructAffyCNSet: Construct an object of class CNSet from Affymetrix cel files
In crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Description Usage Arguments Value Author(s)

View source: R/cnrma-functions.R

Construct a container for normalized intensities for Affymetrix cel files, referred to as a CNSet

1	constructAffyCNSet(filenames, sns, cdfName, batch, verbose = TRUE, genome)

`filenames`	Vector of cel file names.
`sns`	Sample identifiers. Defaults to `basename(filenames)`.
`cdfName`	Character string indicating annotation package (e.g., "genomewidesnp6Crlmm")
`batch`	Vector of same length as filenames indicating batch.
`verbose`	Logical.
`genome`	Character string indicating UCSC genome build (hg18 or hg19 supported)

An object of class CNSet

R. Scharpf

crlmm documentation built on Nov. 8, 2020, 4:55 p.m.

crlmm index

Package overview Copy number estimation crlmm Vignette - Downstream Analysis crlmm Vignette - Genotyping crlmm Vignette - Illumina 370k chip From Genotypes to Association IlluminaPreprocessCN Vignette for Illumina Infrastructure for copy number analysis Infrastructure for copy number analysis Overview of copy number vignettes Preprocessing and genotyping Illumina arrays for copy number analysis

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