Construct an object of class CNSet from Affymetrix cel files

Description

Construct a container for normalized intensities for Affymetrix cel files, referred to as a CNSet

Usage

1
constructAffyCNSet(filenames, sns, cdfName, batch, verbose = TRUE, genome)

Arguments

filenames

Vector of cel file names.

sns

Sample identifiers. Defaults to basename(filenames).

cdfName

Character string indicating annotation package (e.g., "genomewidesnp6Crlmm")

batch

Vector of same length as filenames indicating batch.

verbose

Logical.

genome

Character string indicating UCSC genome build (hg18 or hg19 supported)

Value

An object of class CNSet

Author(s)

R. Scharpf

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