AssayData-methods: Methods for class "AssayData" in crlmm

In crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Description

The batchStatistics slot in a CNSet object is an instance of the AssayData slot. In general, the accessors for AssayData are called indirectly by the corresponding method for the CNSet class and not called directly by the user.

Methods

Ns

signature(object="AssayData"): Accessor for genotype frequencies

corr

signature(object="AssayData"): Accessor for the correlation of the log-transformed normalized intensities within the diallelic genotype clusters

mads

signature(x="AssayData"): Accessor for the median absolute deviation of the normalized intensities within the diallelic genotype clusters

medians

signature(object="AssayData"): Accessor for the posterior mean of the normalized intensity within the diallelic genotype clusters.

tau2

signature(object="AssayData"): Accessor for the median absolute deviation of the log-transformed intensities within the diallelic genotype clusters

See Also

CNSet-class, Ns, tau2, corr, mads, medians

crlmm documentation built on Nov. 8, 2020, 4:55 p.m.