SynMut: SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures

There are increasing demands on designing virus mutants with specific dinucleotide or codon composition. This tool can take both dinucleotide preference and/or codon usage bias into account while designing mutants. It is a powerful tool for in silico designs of DNA sequence mutants.

Package details

AuthorHaogao Gu [aut, cre], Leo L.M. Poon [led]
Bioconductor views ExperimentalDesign Preprocessing SequenceMatching
MaintainerHaogao Gu <hggu@connect.hku.hk>
LicenseGPL-2
Version1.6.0
URL https://github.com/Koohoko/SynMut
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SynMut")

Try the SynMut package in your browser

Any scripts or data that you put into this service are public.

SynMut documentation built on Nov. 8, 2020, 8:01 p.m.